Gene detail information of Glyur000846s00019252.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G35360.10acetyl Co-enzyme a carboxylase biotin carboxylase subunit
NRXP_004503555.10PREDICTED: biotin carboxylase 1, chloroplastic-like [Cicer arietinum]
COGYP_001869185.10acetyl-CoA carboxylase biotin carboxylase subunit [Nostoc punctiforme PCC 73102]
Swissprottr|B9HBA8|ACCC1_POPTR0Biotin carboxylase 1, chloroplastic (Precursor)
trEMBLtr|O23960|O23960_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G36450.1} (Precursor)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008466748376472+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01961accC EC:6.4.1.2 6.3.4.14 Carbon metabolism map01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Carbon fixation pathways in prokaryotesmap00720
Fatty acid biosynthesismap00061
Tetracycline biosynthesismap00253


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004075  biotin carboxylase activity

GO:0005524  ATP binding

GO:0016874  ligase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000846s00019252.2PF00289.17CPSase_L_chain771841.20E-37
Glyur000846s00019252.2PF02786.12CPSase_L_D21893962.70E-80
Glyur000846s00019252.2PF02785.14Biotin_carb_C4105151.10E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.821
SRR1783600control56.035
SRR1783602moderate drought stress46.179
SRR1811619moderate drought stress46.436

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.049
DRR006520Root Summer glycyrrhizin high producing strain40.673
DRR006521Root Winter glycyrrhizin high producing strain15.927
DRR006522Root Winter glycyrrhizin high producing strain15.126
DRR006523Root Summer glycyrrhizin low producing strain42.372
DRR006524Root Summer glycyrrhizin low producing strain42.564
DRR006525Leaf Summer glycyrrhizin high producing strain41.808
DRR006526Leaf Summer glycyrrhizin high producing strain41.541

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)107.735
SRR2868004Drought Stress(Tissue:root)60.094
SRR2967015Control (Tissue:root)60.164

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.092
SRR9715740Leave41.592
SRR9715741Leave36.173
SRR9715739Root37.233
SRR9715742Root37.030
SRR9715743Root36.651

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.397
SRR8749028MeJA induced 9h39.167
SRR8749029MeJA induced 9h48.433
SRR8749030Uninduced14.951
SRR8749031Uninduced11.870
SRR8749032Uninduced11.960

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root124.749
SRR8400027Control-Root125.487

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved