Gene detail information of Glyur000846s00019256.2 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G35400.1 | 3.00E-118 | Pseudouridine synthase family protein |
NR | KHN16701.1 | 0 | tRNA pseudouridine synthase A [Glycine soja] |
COG | YP_006705776.1 | 2.00E-14 | tRNA pseudouridine synthase A [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
Swissprot | tr|C0LGU0|RLK_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase RLK (Precursor) |
trEMBL | tr|I1KPQ1|I1KPQ1_SOYBN | 0 | tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00846 | 84648 | 94579 | - |
Gene family
Gene family | subfamily |
---|---|
Protein Kinases Family | PPC:1.13.4 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000846s00019256.2 | PF08263.7 | LRRNT_2 | 29 | 69 | 1.20E-07 |
Glyur000846s00019256.2 | PF13855.1 | LRR_8 | 121 | 181 | 2.40E-09 |
Glyur000846s00019256.2 | PF00069.20 | Pkinase | 338 | 604 | 1.50E-30 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 6.491 |
SRR1783600 | control | 7.305 |
SRR1783602 | moderate drought stress | 8.916 |
SRR1811619 | moderate drought stress | 8.863 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 8.696 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 8.626 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 4.481 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 4.264 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 24.882 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 25.046 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.060 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.027 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 10.391 |
SRR2868004 | Drought Stress(Tissue:root) | 10.633 |
SRR2967015 | Control (Tissue:root) | 11.689 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 3.470 |
SRR9715740 | Leave | 4.145 |
SRR9715741 | Leave | 4.279 |
SRR9715739 | Root | 1.606 |
SRR9715742 | Root | 4.998 |
SRR9715743 | Root | 5.085 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 9.529 |
SRR8749028 | MeJA induced 9h | 8.214 |
SRR8749029 | MeJA induced 9h | 6.631 |
SRR8749030 | Uninduced | 3.803 |
SRR8749031 | Uninduced | 1.850 |
SRR8749032 | Uninduced | 2.460 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 8.521 |
SRR8400027 | Control-Root | 9.379 |