Gene detail information of Glyur000847s00024869.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67850.2 | 1.00E-168 | Protein of unknown function (DUF707) |
| NR | XP_004502391.1 | 0 | PREDICTED: uncharacterized protein LOC101511137 isoform X1 [Cicer arietinum] |
| COG | YP_001940717.1 | 5.00E-07 | hypothetical protein Minf_2066 [Methylacidiphilum infernorum V4] |
| trEMBL | tr|G7J360|G7J360_MEDTR | 0 | Lysine ketoglutarate reductase trans-splicing protein {ECO:0000313|EMBL:AES72153.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00847 | 64108 | 69235 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000847s00024869.1 | PF05212.7 | DUF707 | 89 | 380 | 1.30E-163 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.885 |
| SRR1783600 | control | 15.165 |
| SRR1783602 | moderate drought stress | 14.257 |
| SRR1811619 | moderate drought stress | 14.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.415 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.415 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.601 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.527 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.643 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 32.234 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.471 |
| SRR2967015 | Control (Tissue:root) | 28.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 55.768 |
| SRR9715740 | Leave | 60.274 |
| SRR9715741 | Leave | 73.179 |
| SRR9715739 | Root | 6.075 |
| SRR9715742 | Root | 23.138 |
| SRR9715743 | Root | 20.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.985 |
| SRR8749028 | MeJA induced 9h | 54.151 |
| SRR8749029 | MeJA induced 9h | 42.082 |
| SRR8749030 | Uninduced | 32.429 |
| SRR8749031 | Uninduced | 32.273 |
| SRR8749032 | Uninduced | 36.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 34.648 |
| SRR8400027 | Control-Root | 33.799 |