Gene detail information of Glyur000847s00024870.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67856.1 | 2.00E-20 | RING/U-box superfamily protein |
| NR | XP_007163682.1 | 3.44E-40 | hypothetical protein PHAVU_001G255200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SI09|XERIC_ARATH | 1.00E-14 | Probable E3 ubiquitin-protein ligase XERICO |
| trEMBL | tr|V7D380|V7D380_PHAVU | 1.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:ESW35676.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00847 | 77137 | 77553 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000847s00024870.1 | PF13639.1 | zf-RING_2 | 77 | 110 | 8.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.729 |
| SRR1783600 | control | 3.188 |
| SRR1783602 | moderate drought stress | 1.314 |
| SRR1811619 | moderate drought stress | 1.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.677 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.788 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.976 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.820 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.894 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.190 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.397 |
| SRR2967015 | Control (Tissue:root) | 0.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.465 |
| SRR9715740 | Leave | 18.822 |
| SRR9715741 | Leave | 11.595 |
| SRR9715739 | Root | 5.775 |
| SRR9715742 | Root | 8.381 |
| SRR9715743 | Root | 5.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.768 |
| SRR8400027 | Control-Root | 7.903 |