Gene detail information of Glyur000849s00021633.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23780.1 | 1.00E-51 | F-box family protein |
| NR | XP_004496864.1 | 0 | PREDICTED: F-box protein SKIP22-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9ZUB8|SKI22_ARATH | 4.00E-61 | F-box protein SKIP22 |
| trEMBL | tr|I3T224|I3T224_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK46566.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00849 | 43369 | 44793 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000849s00021633.1 | PF12937.2 | F-box-like | 338 | 379 | 3.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.401 |
| SRR1783600 | control | 17.636 |
| SRR1783602 | moderate drought stress | 26.390 |
| SRR1811619 | moderate drought stress | 25.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.189 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.094 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.510 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.282 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.328 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.395 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.916 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.825 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.877 |
| SRR2967015 | Control (Tissue:root) | 23.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.276 |
| SRR9715740 | Leave | 16.979 |
| SRR9715741 | Leave | 14.515 |
| SRR9715739 | Root | 27.715 |
| SRR9715742 | Root | 25.187 |
| SRR9715743 | Root | 24.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.334 |
| SRR8749028 | MeJA induced 9h | 21.060 |
| SRR8749029 | MeJA induced 9h | 11.024 |
| SRR8749030 | Uninduced | 10.568 |
| SRR8749031 | Uninduced | 5.772 |
| SRR8749032 | Uninduced | 5.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.158 |
| SRR8400027 | Control-Root | 17.089 |