Gene detail

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Gene detail information of Glyur000849s00021645.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G14620.1	9.00E-126	xyloglucan endotransglucosylase/hydrolase 10
NR	XP_003555312.1	0	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10-like [Glycine max]
COG	YP_003830841.1	2.00E-10	endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316]
Swissprot	tr\|Q9ZVK1\|XTH10_ARATH	3.00E-164	Probable xyloglucan endotransglucosylase/hydrolase protein 10 (Precursor)
trEMBL	tr\|I1NG54\|I1NG54_SOYBN	0	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000849s00021645.1
TCAAGATTCTGACAGCTAAAATATTCCTTTGCTTCCTCGTAAAGATATTCTTAATTTTGTCACACCCTTCCATTCCATGCAATACCTATATATAGAATTCCTCAATATCAAATATCAATTGCAACTTTGCAAGTTACATGTACTCAGACATATTCTTTGGCAGGAACCATGAATAACTTCCAAACAGCACTTATCTTCTTCGTTGGGTTTGTTTCCTCGAGTTTCTTTCAAGTTTCAGTTGCATCTATTGTTTCAACAGGAGACTTCAACAAGGACTTCTTTGTGATATGGTCTCCTACCCATGTAAACACATCTGCTGATGGACACACAAGAAGCTTGAAACTGGATCAAGAATCTGGGGCTGGTTTTGCTTCGAACCAGATGTTCTTGTTTGGGAAAATTGACATGCAAATCAAACTAGTACCTGGTCATTCTGCAGGCACAGTTCTGGCCTATTATCTGGCCTCTGATCAACCCAATCGAGATGAGATAGACTTTGAGTTTCTAGGAAACGTCTCTGGCCAGCCATATATTCTTCAAACAAATATTTATGCAGATGGGTTTGACAATCGAGAGGAGAGGATTTATCTGTGGTTTGATCCAACAAAGGACTTCCATACTTATTCTGTGTTGTGGAATCCACACCAGATTGTGTTAATGGTGGATATGATTCCTGTAAGGGTGTATAGAAACCATGCAGACAAGGGAGTGCCATTTCCTAGATGGCAGCCAATGAGTCTAAAAGCCACACTGTGGAATGGTGATGACTGGGCAACACGAGGTGGCCAAGACAAGATTGACTGGACTAAAGGTCCCTTCATAGCTTCATTCAGAAACTACAAGATTGATGCTTGTTTGTGGAAAGGGAACCCAAGGTTTTGCAGAGCATCAAGCTCTACCAATTGGTGGAACCAATACAATTTTAGCACACTGACATCGACACAGAGAAGGTGGTTCAAATGGGTAAGGAAATACCACATGATTTACGACTACTGCCAAGACAATGAGAGGTTCCAAAACAATCTTCCAAAGGAATGTTCACTTCCCAAGTATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00849	100048	101676	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component GO:0005618 cell wall GO:0048046 apoplast molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0016762 xyloglucan:xyloglucosyl transferase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000849s00021645.1	PF00722.16	Glyco_hydro_16	34	214	5.30E-55
Glyur000849s00021645.1	PF06955.7	XET_C	238	290	5.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.378
SRR1783600	control	0.372
SRR1783602	moderate drought stress	0.504
SRR1811619	moderate drought stress	0.489

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.493
DRR006520	Root Summer glycyrrhizin high producing strain	3.350
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.624
DRR006524	Root Summer glycyrrhizin low producing strain	3.734
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.894
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.019

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.677
SRR2868004	Drought Stress(Tissue:root)	2.185
SRR2967015	Control (Tissue:root)	2.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.171
SRR9715740	Leave	0.160
SRR9715741	Leave	0.734
SRR9715739	Root	0.094
SRR9715742	Root	0.827
SRR9715743	Root	0.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.067
SRR8749028	MeJA induced 9h	0.104
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.225
SRR8749031	Uninduced	0.098
SRR8749032	Uninduced	0.135

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.085
SRR8400027	Control-Root	1.157