Gene detail information of Glyur000853s00029666.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G19040.13.00E-89isopentenyltransferase 5
NRKHN37566.19.28E-160Adenylate isopentenyltransferase 5, chloroplastic [Glycine soja]
COGYP_003621095.13.00E-25tRNA delta 2-isopentenylpyrophosphate transferase [Leuconostoc kimchii IMSNU 11154]
Swissprottr|Q94ID2|IPT5_ARATH9.00E-117Adenylate isopentenyltransferase 5, chloroplastic (Precursor)
trEMBLtr|Q2MHM8|Q2MHM8_PEA9.00E-159Adenylate isopentenyltransferase {ECO:0000313|EMBL:BAE75938.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008534256145392-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10760IPT EC:2.5.1.27 2.5.1.112 Zeatin biosynthesis map00908


Gene Ontology

biological_process

GO:0008033  tRNA processing



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000853s00029666.1PF01715.12IPPT761542.30E-16
Glyur000853s00029666.1PF01715.12IPPT1562612.70E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.221
SRR1783600control2.233
SRR1783602moderate drought stress2.011
SRR1811619moderate drought stress1.977

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.332
DRR006520Root Summer glycyrrhizin high producing strain26.118
DRR006521Root Winter glycyrrhizin high producing strain0.102
DRR006522Root Winter glycyrrhizin high producing strain0.098
DRR006523Root Summer glycyrrhizin low producing strain1.242
DRR006524Root Summer glycyrrhizin low producing strain1.335
DRR006525Leaf Summer glycyrrhizin high producing strain1.565
DRR006526Leaf Summer glycyrrhizin high producing strain1.681

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.959
SRR2868004Drought Stress(Tissue:root)2.471
SRR2967015Control (Tissue:root)2.743

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.535
SRR9715740Leave1.004
SRR9715741Leave1.112
SRR9715739Root2.959
SRR9715742Root8.373
SRR9715743Root5.133

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.095
SRR8400027Control-Root1.389

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved