Gene detail information of Glyur000853s00029673.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19080.1 | 2.00E-87 | RING/U-box superfamily protein |
| NR | XP_006584066.1 | 6.24E-162 | PREDICTED: probable E3 ubiquitin-protein ligase LUL4-like [Glycine max] |
| Swissprot | tr|Q84ME1|LUL3_ARATH | 5.00E-108 | Probable E3 ubiquitin-protein ligase LUL3 |
| trEMBL | tr|I1KN91|I1KN91_SOYBN | 2.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G38670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00853 | 82218 | 85211 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000853s00029673.1 | PF13920.1 | zf-C3HC4_3 | 311 | 357 | 1.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.665 |
| SRR1783600 | control | 69.149 |
| SRR1783602 | moderate drought stress | 87.451 |
| SRR1811619 | moderate drought stress | 87.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.329 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 78.480 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 77.381 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 89.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 92.077 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.010 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 87.495 |
| SRR2868004 | Drought Stress(Tissue:root) | 115.451 |
| SRR2967015 | Control (Tissue:root) | 119.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.949 |
| SRR9715740 | Leave | 21.223 |
| SRR9715741 | Leave | 20.196 |
| SRR9715739 | Root | 48.717 |
| SRR9715742 | Root | 44.038 |
| SRR9715743 | Root | 45.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.945 |
| SRR8749028 | MeJA induced 9h | 74.385 |
| SRR8749029 | MeJA induced 9h | 59.621 |
| SRR8749030 | Uninduced | 66.440 |
| SRR8749031 | Uninduced | 79.692 |
| SRR8749032 | Uninduced | 58.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 62.254 |
| SRR8400027 | Control-Root | 61.165 |