Gene detail information of Glyur000854s00021823.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20060.3 | 9.00E-96 | alpha/beta-Hydrolases superfamily protein |
| NR | KHN08117.1 | 8.91E-166 | Acyl-protein thioesterase 2, partial [Glycine soja] |
| COG | YP_007541785.1 | 5.00E-23 | carboxylesterase [Glaciecola psychrophila 170] |
| trEMBL | tr|C6TJQ1|C6TJQ1_SOYBN | 2.00E-163 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G07280.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00854 | 45070 | 51309 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06130 | LYPLA2 | EC:3.1.1.5 | Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000854s00021823.1 | PF02230.11 | Abhydrolase_2 | 25 | 259 | 1.70E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.356 |
| SRR1783600 | control | 1.406 |
| SRR1783602 | moderate drought stress | 1.874 |
| SRR1811619 | moderate drought stress | 1.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.137 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.878 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.820 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.717 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.934 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.663 |
| SRR2967015 | Control (Tissue:root) | 1.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.234 |
| SRR9715740 | Leave | 5.282 |
| SRR9715741 | Leave | 3.546 |
| SRR9715739 | Root | 3.957 |
| SRR9715742 | Root | 12.037 |
| SRR9715743 | Root | 10.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.011 |
| SRR8749028 | MeJA induced 9h | 5.358 |
| SRR8749029 | MeJA induced 9h | 9.654 |
| SRR8749030 | Uninduced | 2.121 |
| SRR8749031 | Uninduced | 1.576 |
| SRR8749032 | Uninduced | 2.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.608 |
| SRR8400027 | Control-Root | 2.498 |