Gene detail information of Glyur000854s00021830.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11380.101-deoxy-D-xylulose 5-phosphate synthase 3
NRXP_004501298.10PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum]
COGYP_001412061.101-deoxy-D-xylulose-5-phosphate synthase [Parvibaculum lavamentivorans DS-1]
Swissprottr|O78328|DXS_CAPAN0Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBLtr|G7JBM5|G7JBM5_MEDTR01-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313|EMBL:AES73691.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0085498654103775-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01662dxs EC:2.2.1.7 Thiamine metabolism map00730
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0016114  terpenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008661  1-deoxy-D-xylulose-5-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000854s00021830.1PF13292.1DXP_synthase_N253092.00E-82
Glyur000854s00021830.1PF02779.19Transket_pyr3465065.80E-29
Glyur000854s00021830.1PF02780.15Transketolase_C5226451.60E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.367
SRR1783600control4.320
SRR1783602moderate drought stress5.933
SRR1811619moderate drought stress5.696

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.217
DRR006520Root Summer glycyrrhizin high producing strain8.234
DRR006521Root Winter glycyrrhizin high producing strain20.283
DRR006522Root Winter glycyrrhizin high producing strain19.825
DRR006523Root Summer glycyrrhizin low producing strain10.336
DRR006524Root Summer glycyrrhizin low producing strain9.842
DRR006525Leaf Summer glycyrrhizin high producing strain5.470
DRR006526Leaf Summer glycyrrhizin high producing strain5.382

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.267
SRR2868004Drought Stress(Tissue:root)15.729
SRR2967015Control (Tissue:root)16.242

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.672
SRR9715740Leave8.439
SRR9715741Leave7.260
SRR9715739Root2.898
SRR9715742Root8.193
SRR9715743Root7.699

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.607
SRR8749028MeJA induced 9h12.460
SRR8749029MeJA induced 9h7.283
SRR8749030Uninduced9.041
SRR8749031Uninduced7.592
SRR8749032Uninduced6.026

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.952
SRR8400027Control-Root13.132

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved