Gene detail information of Glyur000856s00034993.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G14720.14.00E-129xyloglucan endotransglucosylase/hydrolase 28
NRXP_003529235.10PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like isoform X1 [Glycine max]
COGYP_003060495.16.00E-13glycoside hydrolase family protein [Hirschia baltica ATCC 49814]
Swissprottr|Q38909|XTH28_ARATH8.00E-164Probable xyloglucan endotransglucosylase/hydrolase protein 28 (Precursor)
trEMBLtr|I1KKZ1|I1KKZ1_SOYBN0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008563780340923+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000856s00034993.1PF00722.16Glyco_hydro_16302131.70E-56
Glyur000856s00034993.1PF06955.7XET_C2532903.00E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.025
SRR1783600control2.957
SRR1783602moderate drought stress2.210
SRR1811619moderate drought stress2.200

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.523
DRR006520Root Summer glycyrrhizin high producing strain2.663
DRR006521Root Winter glycyrrhizin high producing strain2.685
DRR006522Root Winter glycyrrhizin high producing strain2.567
DRR006523Root Summer glycyrrhizin low producing strain12.841
DRR006524Root Summer glycyrrhizin low producing strain12.590
DRR006525Leaf Summer glycyrrhizin high producing strain0.215
DRR006526Leaf Summer glycyrrhizin high producing strain0.213

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.713
SRR2868004Drought Stress(Tissue:root)1.761
SRR2967015Control (Tissue:root)2.825

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.314
SRR9715740Leave1.106
SRR9715741Leave1.410
SRR9715739Root0.979
SRR9715742Root1.314
SRR9715743Root1.471

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.614
SRR8749028MeJA induced 9h32.163
SRR8749029MeJA induced 9h19.772
SRR8749030Uninduced15.450
SRR8749031Uninduced8.835
SRR8749032Uninduced6.178

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.101
SRR8400027Control-Root2.359

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved