Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000859s00026231.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	0	S-locus lectin protein kinase family protein
NR	XP_007133113.1	0	hypothetical protein PHAVU_011G152400g [Phaseolus vulgaris]
COG	YP_284821.1	1.00E-21	protein kinase:GAF [Dechloromonas aromatica RCB]
Swissprot	tr\|O81832\|Y4729_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|V7AHL4\|V7AHL4_PHAVU	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000859s00026231.1
ATTCACCAGGTTTCTGTCATCAACGACCTGTTACAGAACACATTGAACACATCATACATGCAATGTAAAATTAGAGTATGCCTAAAAGTAGAGCCTGACCAAAAATTCCAAAAAGCATCAATGGCCATTTTCACTGTTCCCTTTGTTGNTACCAAGCTAATACNCATCATCNTCACCATCATCANANTGCTNCTTTCTCCTTCAATTTCCTCTTCAACTGATACCCTTAATGGGTCTCAGTCACTTTCTGATGATGGCAGCACTTTGGTGTCCAAAGATGGAACCTTTGAAATGGGTTTNTTCAGTCCAGGCAATAACAACCCAAACCACTATCTGGGTATCTGGTACAAAAAGATCCCAGTTAGAACCGTTGTTTGGGTTGCAAACCGTAACAACCCAGTCAAAGACNATTCCAGCATGTTGACCATAGACACACATGGGAAACTTGTGATCCTCAGCAATAACAACANAACTCTTGTTTGGTNANCAAACTCAACAACAGCACAAGAAGATGNAGAGAGTCCAATTGTGCAGCTTTTGGACTCAGGAAACTTAGTATTAAGAGATGAGAAAGACCAAAACAACCCTTCAAACTACTTGTGGCAGAGCTTTGACTACCCTTGTGATACTTTTTTGGCAGGAATGAAGATTGGAGTGAACCTGAAGACAGGTATGAACCGTTACTTGACNGCATGGAAGAATTGGGATGATCCTTCTCCTGGGGATTTGACTTGTGATCTTGTACTTGGTAACATACCTGAGGTGGTTATGTGGAAGGGTTCCAAGGAGTACCATAGGAGTGGNCCTTGGAATGGTGTTAGGTTTGGTGGTGGAAAAAACACACCCCTTTTCAACTTAGAGTTTGTGTCCACTGAGGATGAGGTGTGTTACACATACAACCCCAAGAATAAGTCGGTGATTACAAGAGTGGTTCTGAATCAGTCTCTTTCAGCTCGCCAGCGCTATAATTGGAATGAAGAGAATCAAACTTGGATNCTTTATTCATCAGCTCCAAGGGATATTTGTGACAACTATAATCACTGTGGTGCATATCAGAATTGTGTCATGAGTGAGTCACCACCCTGCCAGTGCCTAAATGGGTTTAGGCCAAAATCACCTGGGAGTTATGAGGCATTGGATTGGACACAAGGGTGTGTGCTGAGTGAACCTTGGAGTTGTAAGGTGAAAGACCGTGATGGTTTTAGGAAATTCGTTGGGGTGAAAATGCCTGACACTAAAAATACTTCGGTTATTAATGGGAGCTTGACACTTGAGGATTGTAAGGCTAAATGCTTGGAGAACTGTTCTTGCACAGCTTATGCAAACTTGGATGTTAGGGGAGAAGGTAGTGGTTGTATCATTTGGTTTGGAGCTCTAATTGATTTNAGGATGGTTTCGGTTCCCGGGCAAGATCTATATGTTCGAATGGCTGTCTCAGAAACTGATGTGAAGGGAGGGCATAGGAAAAAGTTGGCTGTGGTAATTGCAGTTGCTGCTACCCTTTTATTGGTTNTTGTGATTGGTTTCATTTTCACTTGCATTTACAAGAGGAAAAGAAAGCTTAAAGAGGAACCAGAAAAAACCTCAGAAGAAAAGATAGACAAATGCCATGAAGAAGATTTGGAGCTGCCTTTCTTTGATTTTGCNACAATANNTCGNGCCACNAATGACTTCTCAAGTGACAANAGGCTTGGAGAAGGTGGTTTTGGGCCTGTCTACAGGGGTACTCTACCAGATGGACAAGAGATTGCTGTCAAGAGACTTTCAAATAATTCTGGACAAGGAACAAAAGAGTTCAAGAATGAAGTTATCCTCTGCGCTAAACTTCAGCATCGGAATCTTGTTAAGGTTCTTGGTTGTTCCACACGAGGAGAGGAAAAAGTGCTCGTCTATGAATACATGCCTAATAAAAGCCTAGATTCCTGTCTCTTTGATTCTTCTAAGAGTGGACACCTGAATTGGTCTAAGCGCTTTAACATTATATTTGGAATTGCTCGGGGACTTCTTTATCTCCATCAAGATTCAAGATTAAGAATCATTCATAGAGANCTGAAAGCAAGTAATATTCTACTAGATGGCGAGTTGAATCCAAAAATTTCAGATTTTGGAGTGGCGCGGATGTTTAGTGGAAATCAAACAGAAGGGAATACAAAAATGGTAGCTGGAACATATGGTTACATGGCACCAGAATATGCAATTGATGGACTATTCTCGATCAAATCCGATGTATTTAGCTTTGGTGTATTACTACTGGAGATNGTGAGTGGGAAGAAAAACACTGGAGTTTTCTTTCCAAATCAAGGATTTAATCTATTAGGACATGCATGGAAAACATGGAAAGAGAACACTCCAATGAAATTAATTGATGCTTCTTTGAGTGAATCCTTTACCTTATCAGAAGTACTAAGGTGCATCCATGTTGGTCTTCTATGTGTGCAACTACATCCTGAGGATAGGCCAAACATGGCATCAGTGATTTTGATGTTGAGCAGTGAAAATACCTTGCCACAACCTAAGGAGCCTGGTTTCCTTATTGAAAGGATGACAATTGCNGGAGAACATTCATCTCAGATTTTTTCTTCCACTAATGAATTAACTATGACACTGTTAAAGGCTAGATAGATTGGCGCAATGGTAAGGTTGCTACCTTGTAACCCGAGGGTCACAGGTTCAAATCTTGAAACAGTTTCTCTGCTTGCGGAATAAGGCTGCATATGTCTACTCTCTCCAAACCTCATATAATGGGAGTCTCGTGCACTGAGCCGCCCTTCTTACTGTTAAAGGCTAGATAAAGTTGTTTTATTCTTAGGTTTATAATATGCAAGTGTAGTCTTCTATTTTCTCAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00859	91893	95916	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000859s00026231.1	PF01453.19	B_lectin	103	220	2.80E-30
Glyur000859s00026231.1	PF00954.15	S_locus_glycop	246	353	4.00E-29
Glyur000859s00026231.1	PF08276.6	PAN_2	374	442	6.90E-20
Glyur000859s00026231.1	PF07714.12	Pkinase_Tyr	542	807	2.40E-43
Glyur000859s00026231.1	PF11883.3	DUF3403	813	854	3.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.830
SRR1783600	control	1.786
SRR1783602	moderate drought stress	7.834
SRR1811619	moderate drought stress	7.932

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.525
DRR006520	Root Summer glycyrrhizin high producing strain	8.475
DRR006521	Root Winter glycyrrhizin high producing strain	7.518
DRR006522	Root Winter glycyrrhizin high producing strain	7.443
DRR006523	Root Summer glycyrrhizin low producing strain	26.315
DRR006524	Root Summer glycyrrhizin low producing strain	25.541
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.033

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	11.363
SRR2868004	Drought Stress(Tissue:root)	15.082
SRR2967015	Control (Tissue:root)	20.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.107
SRR9715740	Leave	2.033
SRR9715741	Leave	4.021
SRR9715739	Root	0.273
SRR9715742	Root	1.760
SRR9715743	Root	1.854

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.011
SRR8749028	MeJA induced 9h	5.374
SRR8749029	MeJA induced 9h	2.773
SRR8749030	Uninduced	2.766
SRR8749031	Uninduced	1.870
SRR8749032	Uninduced	0.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.060
SRR8400027	Control-Root	4.233