Gene detail information of Glyur000861s00034118.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56970.15.00E-169cytokinin oxidase 3
NRXP_003547474.10PREDICTED: cytokinin dehydrogenase 3-like [Glycine max]
COGYP_001547531.12.00E-66FAD linked oxidase domain-containing protein [Herpetosiphon aurantiacus DSM 785]
Swissprottr|Q9LTS3|CKX3_ARATH0Cytokinin dehydrogenase 3 (Precursor)
trEMBLtr|I1MH82|I1MH82_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G18560.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008619294697869+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00279CKX EC:1.5.99.12 Zeatin biosynthesis map00908


Gene Ontology

biological_process

GO:0009690  cytokinin metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0008762  UDP-N-acetylmuramate dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016614  oxidoreductase activity, acting on CH-OH group of donors

GO:0019139  cytokinin dehydrogenase activity

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000861s00034118.1PF01565.18FAD_binding_4601961.10E-18
Glyur000861s00034118.1PF09265.5Cytokin-bind2345141.90E-114


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.621
SRR1783600control0.619
SRR1783602moderate drought stress0.160
SRR1811619moderate drought stress0.175

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.673
DRR006520Root Summer glycyrrhizin high producing strain0.596
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.486
DRR006524Root Summer glycyrrhizin low producing strain0.600
DRR006525Leaf Summer glycyrrhizin high producing strain0.528
DRR006526Leaf Summer glycyrrhizin high producing strain0.486

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.837
SRR2868004Drought Stress(Tissue:root)1.436
SRR2967015Control (Tissue:root)2.164

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.812
SRR9715740Leave3.662
SRR9715741Leave6.183
SRR9715739Root0.142
SRR9715742Root0.034
SRR9715743Root0.036

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.017
SRR8749031Uninduced0.202
SRR8749032Uninduced0.032

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.567
SRR8400027Control-Root0.813

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved