Gene detail information of Glyur000866s00031717.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17895.1 | 7.00E-103 | ubiquitin-specific protease 20 |
| NR | XP_004512524.1 | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] |
| COG | YP_004671606.1 | 1.00E-13 | hypothetical protein SNE_A12380 [Simkania negevensis Z] |
| Swissprot | tr|Q9FPS7|UBP20_ARATH | 1.00E-117 | Ubiquitin carboxyl-terminal hydrolase 20 |
| trEMBL | tr|K7LF25|K7LF25_SOYBN | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00866 | 80660 | 84219 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000866s00031717.1 | PF00443.24 | UCH | 155 | 457 | 4.50E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.689 |
| SRR1783600 | control | 4.680 |
| SRR1783602 | moderate drought stress | 3.107 |
| SRR1811619 | moderate drought stress | 3.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.520 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.399 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.422 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.285 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.353 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.074 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.170 |
| SRR2967015 | Control (Tissue:root) | 5.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.489 |
| SRR9715740 | Leave | 2.127 |
| SRR9715741 | Leave | 3.402 |
| SRR9715739 | Root | 0.983 |
| SRR9715742 | Root | 1.524 |
| SRR9715743 | Root | 1.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.675 |
| SRR8749028 | MeJA induced 9h | 7.986 |
| SRR8749029 | MeJA induced 9h | 8.474 |
| SRR8749030 | Uninduced | 5.655 |
| SRR8749031 | Uninduced | 5.121 |
| SRR8749032 | Uninduced | 3.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.959 |
| SRR8400027 | Control-Root | 4.644 |