Gene detail information of Glyur000872s00034607.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10150.1 | 3.00E-40 | RING/U-box superfamily protein |
| NR | XP_003605368.1 | 2.03E-92 | RING finger family protein [Medicago truncatula] |
| Swissprot | tr|Q9SN28|ATL7_ARATH | 1.00E-61 | RING-H2 finger protein ATL7 |
| trEMBL | tr|G7JKP9|G7JKP9_MEDTR | 8.00E-93 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES87565.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00872 | 53916 | 58082 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000872s00034607.1 | PF13639.1 | zf-RING_2 | 117 | 160 | 6.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.925 |
| SRR1783600 | control | 9.955 |
| SRR1783602 | moderate drought stress | 21.342 |
| SRR1811619 | moderate drought stress | 21.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.302 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.730 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.543 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.809 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.933 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.982 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.296 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.303 |
| SRR2967015 | Control (Tissue:root) | 10.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.996 |
| SRR9715740 | Leave | 13.253 |
| SRR9715741 | Leave | 15.788 |
| SRR9715739 | Root | 0.935 |
| SRR9715742 | Root | 4.664 |
| SRR9715743 | Root | 3.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.501 |
| SRR8749028 | MeJA induced 9h | 12.972 |
| SRR8749029 | MeJA induced 9h | 8.516 |
| SRR8749030 | Uninduced | 7.952 |
| SRR8749031 | Uninduced | 4.704 |
| SRR8749032 | Uninduced | 5.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.793 |
| SRR8400027 | Control-Root | 8.114 |