Gene detail information of Glyur000873s00032919.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01220.1 | 4.00E-125 | sulfoquinovosyldiacylglycerol 2 |
| NR | XP_003516943.1 | 0 | PREDICTED: uncharacterized protein LOC100780899 [Glycine max] |
| COG | YP_007141580.1 | 2.00E-47 | group 1 glycosyl transferase [Crinalium epipsammum PCC 9333] |
| trEMBL | tr|I1J786|I1J786_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G27840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00873 | 89256 | 93696 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06119 | SQD2 | EC:2.4.1.- | Glycerolipid metabolism | map00561 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000873s00032919.1 | PF13579.1 | Glyco_trans_4_4 | 134 | 280 | 1.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.934 |
| SRR1783600 | control | 4.335 |
| SRR1783602 | moderate drought stress | 3.118 |
| SRR1811619 | moderate drought stress | 3.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.544 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.934 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.549 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.296 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.052 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.079 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.846 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 52.059 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.471 |
| SRR2967015 | Control (Tissue:root) | 37.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.147 |
| SRR9715740 | Leave | 9.032 |
| SRR9715741 | Leave | 10.161 |
| SRR9715739 | Root | 8.199 |
| SRR9715742 | Root | 16.952 |
| SRR9715743 | Root | 13.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.185 |
| SRR8749028 | MeJA induced 9h | 5.339 |
| SRR8749029 | MeJA induced 9h | 1.035 |
| SRR8749030 | Uninduced | 1.870 |
| SRR8749031 | Uninduced | 1.017 |
| SRR8749032 | Uninduced | 0.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.210 |
| SRR8400027 | Control-Root | 65.000 |