Gene detail information of Glyur000875s00029471.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65560.14.00E-30Pentatricopeptide repeat (PPR) superfamily protein
NRXP_004492944.10PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cicer arietinum]
Swissprottr|Q9SR00|PP213_ARATH2.00E-26Pentatricopeptide repeat-containing protein At3g04760, chloroplastic (Precursor)
trEMBLtr|G7KUA7|G7KUA7_MEDTR0PPR containing plant-like protein {ECO:0000313|EMBL:AES80557.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008758772589488+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000875s00029471.1PF01535.15PPR1782020.00088
Glyur000875s00029471.1PF13041.1PPR_22062559.30E-10
Glyur000875s00029471.1PF13812.1PPR_33493790.0023
Glyur000875s00029471.1PF13041.1PPR_23834251.50E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.603
SRR1783600control0.656
SRR1783602moderate drought stress1.200
SRR1811619moderate drought stress1.110

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.371
DRR006520Root Summer glycyrrhizin high producing strain2.197
DRR006521Root Winter glycyrrhizin high producing strain0.539
DRR006522Root Winter glycyrrhizin high producing strain0.400
DRR006523Root Summer glycyrrhizin low producing strain2.564
DRR006524Root Summer glycyrrhizin low producing strain2.727
DRR006525Leaf Summer glycyrrhizin high producing strain0.711
DRR006526Leaf Summer glycyrrhizin high producing strain0.838

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.119
SRR2868004Drought Stress(Tissue:root)1.384
SRR2967015Control (Tissue:root)1.770

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.689
SRR9715740Leave1.195
SRR9715741Leave1.125
SRR9715739Root0.127
SRR9715742Root0.719
SRR9715743Root0.654

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.654
SRR8749028MeJA induced 9h0.613
SRR8749029MeJA induced 9h0.459
SRR8749030Uninduced0.318
SRR8749031Uninduced0.403
SRR8749032Uninduced0.139

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.325
SRR8400027Control-Root1.227

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved