Gene detail information of Glyur000876s00020494.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G22360.17.00E-74SWIB complex BAF60b domain-containing protein
NRXP_004500124.10PREDICTED: uncharacterized protein LOC101504815 [Cicer arietinum]
COGYP_002496615.11.00E-19SWIB/MDM2 domain-containing protein [Methylobacterium nodulans ORS 2060]
trEMBLtr|I1KYE8|I1KYE8_SOYBN3.00E-172Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43590.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008762999834456-


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000876s00020494.1PF08766.6DEK_C3601.10E-08
Glyur000876s00020494.1PF02201.13SWIB1642388.40E-28
Glyur000876s00020494.1PF02201.13SWIB2693401.60E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.999
SRR1783600control20.273
SRR1783602moderate drought stress34.277
SRR1811619moderate drought stress33.999

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.707
DRR006520Root Summer glycyrrhizin high producing strain21.532
DRR006521Root Winter glycyrrhizin high producing strain39.294
DRR006522Root Winter glycyrrhizin high producing strain38.755
DRR006523Root Summer glycyrrhizin low producing strain17.198
DRR006524Root Summer glycyrrhizin low producing strain17.676
DRR006525Leaf Summer glycyrrhizin high producing strain18.373
DRR006526Leaf Summer glycyrrhizin high producing strain18.699

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.925
SRR2868004Drought Stress(Tissue:root)49.986
SRR2967015Control (Tissue:root)53.756

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.499
SRR9715740Leave26.529
SRR9715741Leave28.720
SRR9715739Root7.787
SRR9715742Root17.394
SRR9715743Root14.230

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.469
SRR8749028MeJA induced 9h63.044
SRR8749029MeJA induced 9h39.858
SRR8749030Uninduced50.152
SRR8749031Uninduced48.242
SRR8749032Uninduced34.057

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.940
SRR8400027Control-Root33.339

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved