Gene detail

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Gene detail information of Glyur000877s00023938.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10530.1	1.00E-126	Concanavalin A-like lectin protein kinase family protein
NR	XP_004504940.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Cicer arietinum]
COG	YP_003640725.1	1.00E-18	serine/threonine protein kinase [Thermincola potens JR]
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	2.00E-152	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|V7CPB0\|V7CPB0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31168.1}

Sequence

Transcript Sequence

>Glyur000877s00023938.2
CTCGCCGCTTCAACCTTAAGTTTATACTTACATATGATAGTGTTCCAGAACTAGTCACTTACTGATGGCTCCTTTGCATATTATTAGCCTTCACACTCCAACTCTCTTTTTCTGTTATGCAATAGGAACCATTTTCACCCTCCAAATAATCCATCTTGCAAGCTCACTATCATTTGATTACCCCGACTTTAAGAAAGGTGATGTCAATTGGGAAGGAGATTCTTCGCTTCACAAAGGAGCTATCCAAGTCACTTCCAACACCATGGACCAGAACAACAATTACAGTGTTGGGCGTGTCACAAGTTTTGGAAACATGCGCCTCTGGGATGTGAACTCTGGCGAGCTCTCTGACTTCACTACCAAGTTTTCCTTTGTTGTTTATTCAGAGAAGAGTTATTATGGAGATGGAATGGCATTCTTTTTGGCTGATCCAAAGCTCCCACTTGTGAAGGGTATTAAAGAAGGAGGTGGTCTTGGCCTAGTGGATGGAGACCAAGTAATGAAATCAACCCAATACTCATTTGTGGCAGTGGAGTTTGACACCTTCAATAACCCATCGTGGGACCCTTCAGGTCAAGGCACTCATGTAGGCTTGAATTTCAACTCCATGAGGTCTAACATAACTAAGCCATGGCTGACGGATATTAAGCAATGGAGGGTTTACAATTGCAGCATTGAGTACAATTCCAGCACCCATAATTTGAGTGCTTCATTCACTGTGTACCGTGATGGTAAACCGGTTGAAGAATACATATCATACAAGGTTGATCTGAGAGATTGCTTACCAGAGTGGGTTATTATTGGCTTCTCGGCTGCAACAGGAAGATTGTATGAGGTGCACACTCTGCGGTCATGGTCCTTTAGTTCAAGTCTACTAAGTGATGAGAACACAAAACAAATAACACCAATTGCGGCCGCACCAATCCCGATTCCTATTTCTGGAAAAGAAAAGAAGATAGGATTGTGGGTGGGGCTTGGAATTGGTGCAGGCTTGTCTGTGAGTTTGTCAGGGCTGGTTTGTACTCTATTATGGAAGAGGAGTAGATTGAGAAAAGAAAACTATGGTTTTGATCTCAACATGGATGATGAATTCCAAAAGGGCACTGGACCTAAGAGGTTTTCCTACAATGAACTAGTAAGTGCAACAAACAAATTTGCAGAGTCAGACAAGCTGGGGCAAGGTGGTTTTGGTGGTGTGTATAAAGGTTATTTGAAAGACTTGAACTCCTACGTTGCTATCAAGAGGATATCAAGAGAGTCTAGACAAGGGATACAAGAATATGCGACTGAAGTGAAGGTCATAAGCCAACTGAGACACAGGAATCTAGTACAACTCATAGGTTGGTGCCACAGGAAGAGTGATTTCCTTCTCATATATGAGTTCATGCCAAATGGAAGTTTAGATTCCCATCTATATGGTGGAAAAAGCTTCCTGACTTGGACAGTGAGGTACAACATAGCTCTGGGCTTGGCTTCAGCATTGCTTTACTTACAAGAAGAATGGGAGCAGTGTGTGATTCACAGGGACATTAAATCAAGCAACATCATGTTGGATTCATGTTTCAATGCTAAGCTTGGTGATTTTGGTTTAGCTAGGTTGGTGGATCANGAGAAAGGGTCACAGACCACACTTGTAGCAGGGACAAGGGGTTATATTGCCCCTGAATATTTCACATCAGGAAAGGCTACCAAGGAATCTGATATATACAGCTTTGGGGTTGTGCTATTGGAGATAGCCAGTGGAAGGAAAGCCATTGACAAAGAAGGCAAGGAGGGTCTAACAACTGTTGTTGAGTGGGCCTGGGAGCTCTATGGATTGGGAAAGTTCCATGAAGCAGCTGACCCAAAGTTGTGTGGAGCATTTGATGAGCAGCAATTGGAACGTTTGGTGATTGTTGGCCTTTGCTGNGTTCATCCACATTATTCATTCAGGCCTTCTATAAGGCAAGTGATTCAGGTGCTCAAATTTGAGTCTCCTTTACCAATTCTCCCAGAAAAGATGCCTGTGCCAACGTATCTTCCTCCAACAATAAAAGCATTTTTTTCTTCATTTTCGTCCACCTGGCTTCAAAGTTCAACTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00877	85191	100898	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000877s00023938.2	PF00139.14	Lectin_legB	34	267	8.50E-49
Glyur000877s00023938.2	PF00069.20	Pkinase	367	569	7.50E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.690
SRR1783600	control	0.212
SRR1783602	moderate drought stress	0.644
SRR1811619	moderate drought stress	0.892

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.780
DRR006520	Root Summer glycyrrhizin high producing strain	1.300
DRR006521	Root Winter glycyrrhizin high producing strain	0.795
DRR006522	Root Winter glycyrrhizin high producing strain	1.235
DRR006523	Root Summer glycyrrhizin low producing strain	0.114
DRR006524	Root Summer glycyrrhizin low producing strain	1.821
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.117
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.710

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.121
SRR2868004	Drought Stress(Tissue:root)	1.169
SRR2967015	Control (Tissue:root)	0.887

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.306
SRR9715740	Leave	2.859
SRR9715741	Leave	7.490
SRR9715739	Root	8.876
SRR9715742	Root	6.558
SRR9715743	Root	0.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.621
SRR8749028	MeJA induced 9h	0.987
SRR8749029	MeJA induced 9h	1.392
SRR8749030	Uninduced	1.377
SRR8749031	Uninduced	1.291
SRR8749032	Uninduced	1.560

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.764
SRR8400027	Control-Root	0.807