Gene detail

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Gene detail information of Glyur000878s00027526.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G05230.4	homeodomain GLABROUS 2
NR	XP_006592816.1	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2 [Glycine max]
Swissprot	tr\|Q94C37\|HDG2_ARATH	Homeobox-leucine zipper protein HDG2
trEMBL	tr\|K7LVW4\|K7LVW4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G32050.2}

Sequence

Transcript Sequence

>Glyur000878s00027526.1
CATCGCTGCCACATTTTTCTCCATCCGTTTCCTCTTTCTCCTCCCTCCTTCAATTCAATTCCTCTCTCTCTCTTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCGTCTTCTTCTTCTTCTTTCTCCCATCCCCGTTTCTCCGTGTAAACCAAGCTTTTTCGGGTTAGACCATCGCAACACACACCAAGCTTTCGTTGCTTACCACATAGGCAACTTTCCATAACTTCCTCAAAAAAGCCTTCCTTTGAAAAAGGCCCCTTTTTAAATTTTGGGTACCCCCAAAGCAGATCTAAATTTCTTATACCTTCTTCTAAGCTTGACTCTCCGGCAACTACCCCCTCCCTGAAGTGACGTATTAGCCTTGTTGCGACACCGGCAGAGCTGACAGAATCCAAGGAAGAACCCATTATCCTCCGAAGCCCTTTTCATCGTATATATATATAAGGATCTCTCACAAAATCCACTACATATAAAGAGAGAGAAGAAAAAAAGAGAGGGGGTTGAATTTTGCATAGTAGTACTGCTGAGGGTGGTTGGTTGTTGGNGGCTTTTGTTTTGGATTGTGAAATATGCCAGCTGGTATTATGATTCCGGCGAGAAACATGCCCTCCATGATTGGAAGAAACGGCAACGTTGTTGGTGCGTTTGGATTATCTTCAGCTCTCTCTCTTGGACAGAAAATAATGTTCCAGCCAAACCTAATGGAAGCTGGTGGTGGTCATCATCATCATCAGTTCCACCACCCAGCACTGGACATGGCTGCTCAGAACACTACTACTGCTACCTCCGAAAGCGACGTCCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCCGGTAGCGAAAACCAAGAAGGAGGTGCCTCCGGTGAAGAACAAGACCCTCGTCCCAACAAGAAGAAACGCTATCACCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCCTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAACTGAGCCGAGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTTCAGAACAAGCGCACTCAGATGAAGCTTAGAACTGAGAATGAGAAACTTCGTGCGGATAACATGAGGTTCAGGGAAGCTCTTAGCAATGCCTCGTGTCCCAATTGCGGCGGACCAACCGCTATAGGAGAAATGTCATTCGATGAGCATCACTTGAGGCTCGAAAATGCCCGCCTAAGAGAAGAGATCGACAGGATTTCAGCCATTGCTGCAAAGTACGTGGGGAAGCCTTTGGTCAGCTATCCACTTCTCTCTCCTTCATCTGTTCCTCCGCGTCCACTAGAACTCGGGATCGGTGGTTTCGGAGGCCAACCGGGCGGCATCGGTGGTGACATGTACGGATCAGCGGGAGATCTTCTCAGGTCAATTGGTGGGCCCACAGAAGCCGATAAGCCGATGATAATAGAGCTAGCTGTTGCGGCCATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCCCTTTGGTTGACTACCCTTGATGGCGCCACCACTGTGCTCAACGAGGAGGAATACGTCAGGTCCTTCCCCCGAGGCATTGGTCCTAAACCCGCGGGCTTCAAGTGTGAGGCTTCACGAGAAACCGCTGTTGTCATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACGGTGTTTTCTGGTATCGTCTCAAGAGCAATGACTTTGGAAGTGCTATCAACAGGGGTGGCTGGGAACTACAATGGTGCCTTGCAAGTGATGACGGCAGAACTACAAGTACCATCACCGCTTGTGCCAACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAGCACGGAGATGGGACTTGGGCAGTGGTGGACGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCCGCCAGATCTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTTATATGGGTTGAGCATGTGGAAGTGGATGATAGAGGAGTTCATAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTGGATCGACAATGTGAAAGGCTTGCCAGTGCCATGGCATCAAACATTCCAACCGTAGATGTCGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTGGCGGAGAGAATGTGCATAAGCTTTTGCGCTGGCGTGAGTGCTTCCACGGCTCACACGTGGACAACACTCTCTGGGACTGGGGCTGATGACGTAAGGGTCATGACCCGTAAGAGTGTGGATGACCCGGGAAGGCCTNCTGGTATTGTCCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCAAAAAGAGTGTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGACATCCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACATATTGCTAACGGACGAGANACTGGAAATTGTGTCTCTCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACGGACTCAACGGGCTCTTTTGTTATCTATGCTCCTGTGGACATTGTTGCAATGAACGTGGTTCTAAATGGAGGGGACCCTGACTATGTNGCTCTTCTCCCTTCAGGATTTGCTATACTCCCAGATGGAGGTGGNGACGGCAATATTGGCGGTGAAACTGGCCATGGTGGAGGATCTCTCNTGACTGTTGCGTTTCAGATATTGGTTGATTCAGTTCCAACGGCCAAGCTCTCTCTTGGATCTGTTGCTACTGTTAATAATCTCATTGCATGCACTGTTGAGAGAATCAAGGCTTCATTAACCGGTGAAGTTGCTTGAGTATGCATCAAGTCTAATGGAACATGAGGTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00878	64299	70487	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0008289 lipid binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000878s00027526.1	PF00046.24	Homeobox	112	167	5.70E-18
Glyur000878s00027526.1	PF01852.14	START	294	514	3.10E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.001
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.037
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.277
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.127

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.008
SRR2868004	Drought Stress(Tissue:root)	0.042
SRR2967015	Control (Tissue:root)	0.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.191
SRR9715740	Leave	15.119
SRR9715741	Leave	15.097
SRR9715739	Root	0.000
SRR9715742	Root	1.127
SRR9715743	Root	1.090

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.036
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.080
SRR8400027	Control-Root	0.967