Gene detail information of Glyur000878s00027528.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20570.1 | 4.00E-50 | RING-box 1 |
| NR | XP_004144035.1 | 9.57E-81 | PREDICTED: RING-box protein 1a-like [Cucumis sativus] |
| Swissprot | tr|Q940X7|RBX1A_ARATH | 7.00E-72 | RING-box protein 1a |
| trEMBL | tr|A0A0A0LWN9|A0A0A0LWN9_CUCSA | 4.00E-81 | Uncharacterized protein {ECO:0000313|EMBL:KGN66305.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00878 | 88184 | 91370 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000878s00027528.1 | PF12678.2 | zf-rbx1 | 30 | 107 | 3.70E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.738 |
| SRR1783600 | control | 31.403 |
| SRR1783602 | moderate drought stress | 45.071 |
| SRR1811619 | moderate drought stress | 45.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.315 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.194 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 102.661 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 101.858 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.448 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 80.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.149 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 119.309 |
| SRR2868004 | Drought Stress(Tissue:root) | 100.078 |
| SRR2967015 | Control (Tissue:root) | 105.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 65.128 |
| SRR9715740 | Leave | 65.878 |
| SRR9715741 | Leave | 59.884 |
| SRR9715739 | Root | 65.014 |
| SRR9715742 | Root | 58.315 |
| SRR9715743 | Root | 56.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 137.077 |
| SRR8749028 | MeJA induced 9h | 93.301 |
| SRR8749029 | MeJA induced 9h | 107.886 |
| SRR8749030 | Uninduced | 69.112 |
| SRR8749031 | Uninduced | 40.005 |
| SRR8749032 | Uninduced | 76.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 94.199 |
| SRR8400027 | Control-Root | 86.866 |