Gene detail information of Glyur000879s00025342.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48920.1 | 2.00E-12 | myb domain protein 45 |
| NR | KEH43720.1 | 8.44E-22 | myb transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9M0K4|LAF1_ARATH | 1.00E-13 | Transcription factor LAF1 |
| trEMBL | tr|A0A072W078|A0A072W078_MEDTR | 3.00E-22 | Myb transcription factor {ECO:0000313|EMBL:KEH43720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00879 | 4464 | 7125 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000879s00025342.1 | PF00249.26 | Myb_DNA-binding | 52 | 81 | 8.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.109 |
| SRR1783600 | control | 0.090 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.301 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.287 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.282 |
| SRR2967015 | Control (Tissue:root) | 7.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.365 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.019 |
| SRR9715742 | Root | 0.348 |
| SRR9715743 | Root | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.162 |
| SRR8749028 | MeJA induced 9h | 0.117 |
| SRR8749029 | MeJA induced 9h | 0.391 |
| SRR8749030 | Uninduced | 0.268 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.958 |
| SRR8400027 | Control-Root | 1.369 |