Gene detail information of Glyur000879s00025346.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61250.11.00E-68myb domain protein 17
NRXP_007143400.16.19E-170hypothetical protein PHAVU_007G069400g [Phaseolus vulgaris]
Swissprottr|Q7XBH4|MYB4_ORYSJ2.00E-62Myb-related protein Myb4
trEMBLtr|V7BCT8|V7BCT8_PHAVU2.00E-170Uncharacterized protein {ECO:0000313|EMBL:ESW15395.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008791381215922+


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000879s00025346.1PF00249.26Myb_DNA-binding14613.90E-17
Glyur000879s00025346.1PF00249.26Myb_DNA-binding671124.50E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.159
SRR1783600control0.207
SRR1783602moderate drought stress0.198
SRR1811619moderate drought stress0.147

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.299
DRR006520Root Summer glycyrrhizin high producing strain1.082
DRR006521Root Winter glycyrrhizin high producing strain4.910
DRR006522Root Winter glycyrrhizin high producing strain4.631
DRR006523Root Summer glycyrrhizin low producing strain1.827
DRR006524Root Summer glycyrrhizin low producing strain2.203
DRR006525Leaf Summer glycyrrhizin high producing strain11.632
DRR006526Leaf Summer glycyrrhizin high producing strain10.627

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.718
SRR2868004Drought Stress(Tissue:root)0.488
SRR2967015Control (Tissue:root)0.301

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.398
SRR9715740Leave0.264
SRR9715741Leave0.170
SRR9715739Root0.223
SRR9715742Root0.095
SRR9715743Root0.466

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.572
SRR8749028MeJA induced 9h0.282
SRR8749029MeJA induced 9h0.257
SRR8749030Uninduced0.361
SRR8749031Uninduced0.427
SRR8749032Uninduced0.352

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.511
SRR8400027Control-Root0.839

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved