Gene detail information of Glyur000881s00037824.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06710.16.00E-55homeobox from Arabidopsis thaliana
NRXP_011002298.15.73E-94PREDICTED: homeobox-leucine zipper protein HOX11-like [Populus euphratica]
Swissprottr|A2YW03|HOX27_ORYSI7.00E-72Homeobox-leucine zipper protein HOX27
trEMBLtr|U5GR14|U5GR14_POPTR4.00E-92Uncharacterized protein {ECO:0000313|EMBL:ERP66033.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008814085843627-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000881s00037824.1PF00046.24Homeobox1912456.20E-15
Glyur000881s00037824.1PF02183.13HALZ2472851.30E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.532
SRR1783600control27.725
SRR1783602moderate drought stress50.081
SRR1811619moderate drought stress49.482

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.520
DRR006520Root Summer glycyrrhizin high producing strain29.187
DRR006521Root Winter glycyrrhizin high producing strain5.129
DRR006522Root Winter glycyrrhizin high producing strain5.064
DRR006523Root Summer glycyrrhizin low producing strain23.388
DRR006524Root Summer glycyrrhizin low producing strain23.016
DRR006525Leaf Summer glycyrrhizin high producing strain0.564
DRR006526Leaf Summer glycyrrhizin high producing strain0.560

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.589
SRR2868004Drought Stress(Tissue:root)1.552
SRR2967015Control (Tissue:root)2.467

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.423
SRR9715740Leave0.658
SRR9715741Leave0.852
SRR9715739Root17.684
SRR9715742Root13.891
SRR9715743Root14.682

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.250
SRR8749028MeJA induced 9h1.509
SRR8749029MeJA induced 9h2.420
SRR8749030Uninduced4.977
SRR8749031Uninduced9.415
SRR8749032Uninduced10.493

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.665
SRR8400027Control-Root2.414

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved