Gene detail information of Glyur000881s00037825.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44410.13.00E-42RING/U-box superfamily protein
NRXP_003605354.11.19E-163RING finger protein [Medicago truncatula]
Swissprottr|P93030|RMA2_ARATH1.00E-20E3 ubiquitin-protein ligase RMA2
trEMBLtr|G7JJK5|G7JJK5_MEDTR2.00E-161Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES87551.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008815816159438-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000881s00037825.1PF13923.1zf-C3HC4_21321723.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.041
SRR1783600control14.243
SRR1783602moderate drought stress14.096
SRR1811619moderate drought stress14.630

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.621
DRR006520Root Summer glycyrrhizin high producing strain20.124
DRR006521Root Winter glycyrrhizin high producing strain9.594
DRR006522Root Winter glycyrrhizin high producing strain9.997
DRR006523Root Summer glycyrrhizin low producing strain14.918
DRR006524Root Summer glycyrrhizin low producing strain14.744
DRR006525Leaf Summer glycyrrhizin high producing strain12.126
DRR006526Leaf Summer glycyrrhizin high producing strain11.974

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.432
SRR2868004Drought Stress(Tissue:root)18.444
SRR2967015Control (Tissue:root)16.105

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.858
SRR9715740Leave12.646
SRR9715741Leave13.115
SRR9715739Root3.305
SRR9715742Root5.521
SRR9715743Root5.136

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.253
SRR8749028MeJA induced 9h16.691
SRR8749029MeJA induced 9h11.305
SRR8749030Uninduced13.701
SRR8749031Uninduced7.072
SRR8749032Uninduced11.364

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.999
SRR8400027Control-Root21.055

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved