Gene detail information of Glyur000882s00021657.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32551.10LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
NRKEH35932.10transcriptional corepressor leunig-like protein [Medicago truncatula]
COGYP_007100486.15.00E-32WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q9FUY2|LEUNG_ARATH0Transcriptional corepressor LEUNIG
trEMBLtr|A0A072V282|A0A072V282_MEDTR0Transcriptional corepressor leunig-like protein {ECO:0000313|EMBL:KEH35932.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008824309650825+


Gene family

Gene familysubfamily
Transcription Factors FamilyLUG
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000882s00021657.1PF08513.6LisH17401.20E-05
Glyur000882s00021657.1PF00400.27WD406697007.00E-05
Glyur000882s00021657.1PF00400.27WD407067437.30E-12
Glyur000882s00021657.1PF00400.27WD407507871.70E-06
Glyur000882s00021657.1PF00400.27WD408328661.30E-08
Glyur000882s00021657.1PF00400.27WD409349690.00019


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.411
SRR1783600control24.328
SRR1783602moderate drought stress29.830
SRR1811619moderate drought stress30.461

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.882
DRR006520Root Summer glycyrrhizin high producing strain39.998
DRR006521Root Winter glycyrrhizin high producing strain36.883
DRR006522Root Winter glycyrrhizin high producing strain35.450
DRR006523Root Summer glycyrrhizin low producing strain37.475
DRR006524Root Summer glycyrrhizin low producing strain37.240
DRR006525Leaf Summer glycyrrhizin high producing strain20.749
DRR006526Leaf Summer glycyrrhizin high producing strain20.566

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.484
SRR2868004Drought Stress(Tissue:root)40.030
SRR2967015Control (Tissue:root)45.888

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.288
SRR9715740Leave26.891
SRR9715741Leave26.766
SRR9715739Root16.278
SRR9715742Root42.455
SRR9715743Root34.601

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.584
SRR8749028MeJA induced 9h23.828
SRR8749029MeJA induced 9h15.527
SRR8749030Uninduced15.622
SRR8749031Uninduced9.170
SRR8749032Uninduced7.748

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.878
SRR8400027Control-Root39.766

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved