Gene detail information of Glyur000885s00041682.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08980.5 | 3.00E-88 | F-BOX WITH WD-40 2 |
| NR | XP_007136267.1 | 1.71E-176 | hypothetical protein PHAVU_009G032200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9ZPE4|FBW2_ARATH | 4.00E-120 | F-box protein FBW2 |
| trEMBL | tr|V7ARI4|V7ARI4_PHAVU | 6.00E-177 | Uncharacterized protein {ECO:0000313|EMBL:ESW08262.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00885 | 77543 | 81825 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.015 |
| SRR1783600 | control | 11.270 |
| SRR1783602 | moderate drought stress | 10.470 |
| SRR1811619 | moderate drought stress | 10.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.287 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.920 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.777 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.214 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.647 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.529 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.756 |
| SRR2967015 | Control (Tissue:root) | 16.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.813 |
| SRR9715740 | Leave | 13.173 |
| SRR9715741 | Leave | 7.924 |
| SRR9715739 | Root | 12.035 |
| SRR9715742 | Root | 11.310 |
| SRR9715743 | Root | 12.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.168 |
| SRR8749028 | MeJA induced 9h | 4.723 |
| SRR8749029 | MeJA induced 9h | 4.221 |
| SRR8749030 | Uninduced | 2.728 |
| SRR8749031 | Uninduced | 0.646 |
| SRR8749032 | Uninduced | 1.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.238 |
| SRR8400027 | Control-Root | 22.967 |