Gene detail information of Glyur000886s00024465.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68130.1 | 1.00E-110 | indeterminate(ID)-domain 14 |
| NR | XP_006580086.1 | 0 | PREDICTED: zinc finger protein MAGPIE-like [Glycine max] |
| Swissprot | tr|F4IPE3|IDD15_ARATH | 5.00E-157 | Protein SHOOT GRAVITROPISM 5 |
| trEMBL | tr|K7KQ35|K7KQ35_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G26780.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00886 | 39561 | 42563 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000886s00024465.1 | PF00096.21 | zf-C2H2 | 60 | 82 | 0.0034 |
| Glyur000886s00024465.1 | PF00096.21 | zf-C2H2 | 138 | 160 | 0.008 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.082 |
| SRR1783600 | control | 2.113 |
| SRR1783602 | moderate drought stress | 4.145 |
| SRR1811619 | moderate drought stress | 4.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.289 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.243 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.943 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.968 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.469 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.585 |
| SRR2967015 | Control (Tissue:root) | 10.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.015 |
| SRR9715740 | Leave | 7.880 |
| SRR9715741 | Leave | 9.526 |
| SRR9715739 | Root | 1.313 |
| SRR9715742 | Root | 18.603 |
| SRR9715743 | Root | 16.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.128 |
| SRR8749028 | MeJA induced 9h | 59.909 |
| SRR8749029 | MeJA induced 9h | 58.938 |
| SRR8749030 | Uninduced | 15.717 |
| SRR8749031 | Uninduced | 14.476 |
| SRR8749032 | Uninduced | 8.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.402 |
| SRR8400027 | Control-Root | 16.123 |