Gene detail information of Glyur000890s00019075.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11440.1 | 4.00E-95 | myb domain protein 65 |
| NR | AHB19228.1 | 0 | GAMBY1-like family protein [Glycine max] |
| Swissprot | tr|A2WW87|GAM1_ORYSI | 1.00E-108 | Transcription factor GAMYB |
| trEMBL | tr|K7M0I7|K7M0I7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G25716.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00890 | 33690 | 38146 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000890s00019075.1 | PF00249.26 | Myb_DNA-binding | 69 | 116 | 7.90E-16 |
| Glyur000890s00019075.1 | PF00249.26 | Myb_DNA-binding | 122 | 165 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.508 |
| SRR1783600 | control | 5.624 |
| SRR1783602 | moderate drought stress | 8.447 |
| SRR1811619 | moderate drought stress | 8.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.536 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.435 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.621 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.789 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.683 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.521 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.226 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.900 |
| SRR2967015 | Control (Tissue:root) | 10.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.701 |
| SRR9715740 | Leave | 3.698 |
| SRR9715741 | Leave | 3.072 |
| SRR9715739 | Root | 0.597 |
| SRR9715742 | Root | 1.342 |
| SRR9715743 | Root | 1.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.725 |
| SRR8749028 | MeJA induced 9h | 3.987 |
| SRR8749029 | MeJA induced 9h | 1.980 |
| SRR8749030 | Uninduced | 3.535 |
| SRR8749031 | Uninduced | 1.997 |
| SRR8749032 | Uninduced | 2.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.486 |
| SRR8400027 | Control-Root | 8.613 |