Gene detail information of Glyur000891s00035368.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 5.00E-29 | AP2/B3-like transcriptional factor family protein |
| NR | XP_003551329.1 | 1.75E-130 | PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] |
| Swissprot | tr|Q8L3W1|VRN1_ARATH | 3.00E-32 | B3 domain-containing transcription factor VRN1 |
| trEMBL | tr|K7MSG4|K7MSG4_SOYBN | 7.00E-131 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G30790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00891 | 95877 | 98776 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000891s00035368.1 | PF02362.16 | B3 | 17 | 107 | 5.60E-14 |
| Glyur000891s00035368.1 | PF02362.16 | B3 | 261 | 346 | 1.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.310 |
| SRR1783600 | control | 0.315 |
| SRR1783602 | moderate drought stress | 0.041 |
| SRR1811619 | moderate drought stress | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.135 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.276 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.474 |
| SRR2967015 | Control (Tissue:root) | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.053 |
| SRR9715741 | Leave | 0.058 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.249 |
| SRR9715743 | Root | 0.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.073 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.260 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.232 |
| SRR8400027 | Control-Root | 0.874 |