Gene detail information of Glyur000892s00021920.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18400.1 | 7.00E-55 | NAC domain containing protein 58 |
| NR | XP_003620480.1 | 1.74E-128 | NAC domain protein [Medicago truncatula] |
| Swissprot | tr|Q9FLJ2|NC100_ARATH | 9.00E-53 | NAC domain-containing protein 100 |
| trEMBL | tr|G7KN39|G7KN39_MEDTR | 7.00E-129 | NAC transcription factor-like protein {ECO:0000313|EMBL:AES76698.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00892 | 79994 | 81617 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000892s00021920.1 | PF02365.10 | NAM | 2 | 76 | 8.50E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.664 |
| SRR1783600 | control | 4.250 |
| SRR1783602 | moderate drought stress | 5.680 |
| SRR1811619 | moderate drought stress | 5.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.764 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.828 |
| SRR2967015 | Control (Tissue:root) | 7.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.076 |
| SRR9715740 | Leave | 0.072 |
| SRR9715741 | Leave | 0.292 |
| SRR9715739 | Root | 0.937 |
| SRR9715742 | Root | 0.851 |
| SRR9715743 | Root | 0.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.781 |
| SRR8749028 | MeJA induced 9h | 1.224 |
| SRR8749029 | MeJA induced 9h | 0.680 |
| SRR8749030 | Uninduced | 1.541 |
| SRR8749031 | Uninduced | 3.780 |
| SRR8749032 | Uninduced | 1.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.367 |
| SRR8400027 | Control-Root | 19.835 |