Gene detail

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Gene detail information of Glyur000894s00023630.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02570.4	cullin 1
NR	XP_003533461.1	PREDICTED: cullin-1-like [Glycine max]
Swissprot	tr\|Q94AH6\|CUL1_ARATH	Cullin-1
trEMBL	tr\|I1L117\|I1L117_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05180.1}

Sequence

Transcript Sequence

>Glyur000894s00023630.1
TGATTTCCTTTTATTTTGTTTCCCCCTTTCCTTTTTATTTTTCCATTCCTTCACCTTATTATTGCTNTGTGTGGTGGTGTTGTTTGTGAGCTCGCTCGTCGTCTTCTTCGTCCTTCTGAATTTAACTTTTCCCTCTTCCTTCACCCAAACCCGTTTTCTAGGGTTTCGCTTCGTCGACCTCAACGCGCACGGTTCCTCATCTTTCCACGATTTGGTTTCTAAGCTCGAAGTTTAGTTTGCCGGCATGTCTATGAGTGAGCGCAAGACTATCGACCTAGACCAAGGATGGGATTTTATGCANAAGGGAATACTGAAGCTGAAGAACATTCTAGAAGGGCTGCCTGAGCCTCAGTTCAGCTCCGAGGACTATATGATGCTATACACGACCATATACAATATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAACAACTGTATGACAAGTACAGGGAATCATTNGAAGAGTACATCATCTCAACAGTATTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGAGGGAACTTGTGAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTATCTGGATCGTTACTTTATTGCTCGGAGGTCACTTCCGCCGCTCAATGAAGTTGGGTTGACTTGCTTCCGCGATCTGGTTTACAAGGAACTAAAAGGGAAAGTGAGAGATGCAGTAATTTCTCTTATTGATCAAGAACGCGAAGGAGAGCAGATTGATCGAGCTCTATTAAAAAATGTATTAGATATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTCAAAGACACTTCTGCATATTATTCTCGAAAGGCTTCAAACTGGATCCTAGAAGATTCTTGTCCAGGTTATATGCTCAAGGCTGAGGAGTGCTTGAAACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTTTTATCCGTGTATGCAAACCAACTCCTTGAAAAAGAGCATTCCGGATGTCATGCATTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTTTCTAAAATACCTCGAGGACTGGATCCTGTTTCCAGTATATTTAAGCAGCACGTTACTGAAGAAGGTACAGCATTGGTGAAGTTGGCTGAAGATGCCGCAAGTAACAAGAAGGCAGAGAAAAAGGATATTGTTGGTTTACAGGAGCAGGTTTTTGTTCGAAAGGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAATGATTGTTTCCAAAATCATACTCTATTCCACAAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCAAGTGCAGAACTGCTTGCCACTTTTTGTGATAATATTCTTAAGAAAGGAGGGAGTGAAAAACTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTTGTCAAGTTGCTTGCCTATATTAGCGACAAAGATTTGTTTGCTGAATTTTATAGGAAAAAGCTTGCTCGAAGGCTTCTTTTTGATAAGAGTGCCAATGATGACCATGAGAGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGTCAATTTACCTCAAAGATGGAAGGAATGGTTACAGATTTGACGCTTGCAAAGGAGAACCAAACAAGCTTTGAGGAATATTTAAGCAATAATCCTAATGCAGACCCTGGAATTGACTTGACAGTTACAGTTCTGACTACTGGTTTCTGGCCTAGTTACAAATCCTTTGACCTCAATCTTCCAGCAGAAATGGTTAGGTGTGTTGAAGTTTTCAAGGAATTTTATCAAACAAAAACTAAGCACAGAAAACTGACTTGGATTTATTCCTTGGGTACTTGCAATATAATTGGGAAATTTGAACCAAAAACTATGGAGTTGATTGTGACAACATACCAGGCTTCGGCGTTGCTTCTTTTTAATTCCTCAGATAGACTGAGTTATTCGGAGATAATGACTCAGTTAAACTTATCTGACGATGATGTTATTAGACTGCTTCACTCTTTGTCATGTGCCAAGTACAAAATTCTTAACAAGGAACCAAACACAAAAACAATATCTTCTACTGATTATTTTGAATTTAATTCAAAATTTACAGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAAGTAATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAAGTTTTAAATTACCAACAGTTAGTTATGGAGTGTGTTGAGCAGTTAGGTCGCATGTTTAAGCCTGATGTCAAGGCAATTAAGAAGCGGATTGAAGATTTGATCTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCAAATTTGTTCAAGTACTTGGCATGATGTGGTCTTGATGACTTCACAAATGAAATGGTTACTGCAGTTGATGCAAATAGCAAAACGAGAGGATCATATTTGAACATGCAAAAAAATCAGTTCCTCTTCATAATTTCCTTGAAGGGAGGAGCTGTGAGTGCTTGTAAATTTTGCCTCCATATCCAGGTATGACTGCTACTGTAAATGTGTGCTCATGTTGGAAAAGTTGTAATCAATTTCGTAAGTAGGTCCAGCTCACTGCTACCTTCACTTCCTTTTTCTTTTTTGATTGCTGCATTTCCATCTGATGACTTAGTTGATGCCTACCTGTTAATTGTTTCTCCCACCCCATAAAGGAAATTGGAATTGTGCAACTCTAGTGAANTTGTATTTTGTTATTTTAGAAACCATCAAATGAATGGGCATGTCAGTTGAATCCAAACCCCAACTCTATGGTGCTTTACATTGTTTGTCTATAATCATCTTTCAAATCGACATTTAATTCATTGTTGTGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00894	17356	25817	+

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component GO:0031461 cullin-RING ubiquitin ligase complex molecular_function GO:0031625 ubiquitin protein ligase binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000894s00023630.1	PF00888.17	Cullin	26	648	4.00E-188
Glyur000894s00023630.1	PF10557.4	Cullin_Nedd8	671	738	2.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.595
SRR1783600	control	26.657
SRR1783602	moderate drought stress	31.683
SRR1811619	moderate drought stress	31.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.812
DRR006520	Root Summer glycyrrhizin high producing strain	39.252
DRR006521	Root Winter glycyrrhizin high producing strain	46.464
DRR006522	Root Winter glycyrrhizin high producing strain	45.122
DRR006523	Root Summer glycyrrhizin low producing strain	47.252
DRR006524	Root Summer glycyrrhizin low producing strain	46.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.707

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	56.674
SRR2868004	Drought Stress(Tissue:root)	59.661
SRR2967015	Control (Tissue:root)	61.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	33.761
SRR9715740	Leave	41.143
SRR9715741	Leave	43.522
SRR9715739	Root	5.479
SRR9715742	Root	29.856
SRR9715743	Root	26.330

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.674
SRR8749028	MeJA induced 9h	54.145
SRR8749029	MeJA induced 9h	30.979
SRR8749030	Uninduced	39.742
SRR8749031	Uninduced	32.990
SRR8749032	Uninduced	29.370

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	54.124
SRR8400027	Control-Root	52.231