Gene detail information of Glyur000894s00023639.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44635.10minichromosome maintenance (MCM2/3/5) family protein
NRKEH20801.10minichromosome maintenance (MCM2/3/5) family protein [Medicago truncatula]
COGYP_003649354.12.00E-124replicative DNA helicase Mcm [Thermosphaera aggregans DSM 11486]
Swissprottr|F4KAB8|MCM6_ARATH0DNA replication licensing factor MCM6
trEMBLtr|A0A072TUF1|A0A072TUF1_MEDTR0Minichromosome maintenance (MCM2/3/5) family protein {ECO:0000313|EMBL:KEH20801.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008947522180483-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02542MCM6 EC:3.6.4.12 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006270  DNA replication initiation


cellular_component

GO:0005634  nucleus

GO:0042555  MCM complex


molecular_function

GO:0003677  DNA binding

GO:0003678  DNA helicase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000894s00023639.1PF14551.1MCM_N171351.50E-19
Glyur000894s00023639.1PF00493.18MCM3316531.20E-133


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.309
SRR1783600control6.333
SRR1783602moderate drought stress3.571
SRR1811619moderate drought stress3.484

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.327
DRR006520Root Summer glycyrrhizin high producing strain9.611
DRR006521Root Winter glycyrrhizin high producing strain10.070
DRR006522Root Winter glycyrrhizin high producing strain9.891
DRR006523Root Summer glycyrrhizin low producing strain6.853
DRR006524Root Summer glycyrrhizin low producing strain6.780
DRR006525Leaf Summer glycyrrhizin high producing strain1.549
DRR006526Leaf Summer glycyrrhizin high producing strain1.445

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.796
SRR2868004Drought Stress(Tissue:root)13.801
SRR2967015Control (Tissue:root)13.842

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.559
SRR9715740Leave0.135
SRR9715741Leave1.373
SRR9715739Root0.866
SRR9715742Root3.710
SRR9715743Root3.285

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.257
SRR8749028MeJA induced 9h26.269
SRR8749029MeJA induced 9h12.475
SRR8749030Uninduced0.606
SRR8749031Uninduced0.496
SRR8749032Uninduced0.277

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.899
SRR8400027Control-Root16.959

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved