Gene detail information of Glyur000896s00028920.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44160.10methylenetetrahydrofolate reductase 2
NRXP_007145947.10hypothetical protein PHAVU_007G281200g [Phaseolus vulgaris]
COGYP_112676.12.00E-455,10-methylenetetrahydrofolate reductase [Methylococcus capsulatus str. Bath]
Swissprottr|O80585|MTHR2_ARATH0Methylenetetrahydrofolate reductase 2
trEMBLtr|V7BMY7|V7BMY7_PHAVU0Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008961357320239-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00297metF, MTHFR EC:1.5.1.20 Carbon metabolism map01200
Carbon fixation pathways in prokaryotesmap00720
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006555  methionine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004489  methylenetetrahydrofolate reductase (NAD(P)H) activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000896s00028920.1PF02219.12MTHFR1092323.30E-47


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.479
SRR1783600control42.253
SRR1783602moderate drought stress32.007
SRR1811619moderate drought stress31.445

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain70.292
DRR006520Root Summer glycyrrhizin high producing strain70.154
DRR006521Root Winter glycyrrhizin high producing strain30.252
DRR006522Root Winter glycyrrhizin high producing strain29.033
DRR006523Root Summer glycyrrhizin low producing strain48.682
DRR006524Root Summer glycyrrhizin low producing strain47.987
DRR006525Leaf Summer glycyrrhizin high producing strain56.696
DRR006526Leaf Summer glycyrrhizin high producing strain56.510

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)219.543
SRR2868004Drought Stress(Tissue:root)144.581
SRR2967015Control (Tissue:root)129.936

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave91.583
SRR9715740Leave76.180
SRR9715741Leave70.953
SRR9715739Root30.821
SRR9715742Root60.142
SRR9715743Root56.462

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.351
SRR8749028MeJA induced 9h61.459
SRR8749029MeJA induced 9h38.642
SRR8749030Uninduced37.453
SRR8749031Uninduced32.159
SRR8749032Uninduced25.844

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root131.610
SRR8400027Control-Root113.860

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved