Gene detail information of Glyur000900s00031450.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G53310.30phosphoenolpyruvate carboxylase 1
NRNP_001237394.10phosphoenolpyruvate carboxylase [Glycine max]
COGYP_008045770.10phosphoenolpyruvate carboxylase [Spiribacter salinus M19-40]
Swissprottr|P16097|CAPP2_MESCR0Phosphoenolpyruvate carboxylase 2
trEMBLtr|Q6Q2Z8|Q6Q2Z8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G33820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009001213228567-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01595ppc EC:4.1.1.31 Carbon metabolism map01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710
Carbon fixation pathways in prokaryotesmap00720
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0015977  carbon fixation


molecular_function

GO:0003824  catalytic activity

GO:0008964  phosphoenolpyruvate carboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000900s00031450.2PF00311.12PEPcase1652865.10E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.852
SRR1783600control7.822
SRR1783602moderate drought stress7.643
SRR1811619moderate drought stress7.509

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.511
DRR006520Root Summer glycyrrhizin high producing strain20.257
DRR006521Root Winter glycyrrhizin high producing strain9.287
DRR006522Root Winter glycyrrhizin high producing strain8.864
DRR006523Root Summer glycyrrhizin low producing strain13.285
DRR006524Root Summer glycyrrhizin low producing strain13.084
DRR006525Leaf Summer glycyrrhizin high producing strain28.028
DRR006526Leaf Summer glycyrrhizin high producing strain27.633

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.375
SRR2868004Drought Stress(Tissue:root)12.386
SRR2967015Control (Tissue:root)12.708

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.710
SRR9715740Leave26.718
SRR9715741Leave27.444
SRR9715739Root5.730
SRR9715742Root15.806
SRR9715743Root14.114

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.204
SRR8749028MeJA induced 9h0.027
SRR8749029MeJA induced 9h0.118
SRR8749030Uninduced0.137
SRR8749031Uninduced0.108
SRR8749032Uninduced0.129

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.580
SRR8400027Control-Root23.351

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved