Gene detail information of Glyur000900s00031451.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02000.1 | 1.00E-22 | glutamate decarboxylase 3 |
| NR | XP_003538378.1 | 4.32E-60 | PREDICTED: glutamate decarboxylase 1-like [Glycine max] |
| COG | YP_001511144.1 | 5.00E-10 | glutamate decarboxylase [Frankia sp. EAN1pec] |
| Swissprot | tr|Q9ZPS4|DCE3_ARATH | 8.00E-41 | Glutamate decarboxylase 3 |
| trEMBL | tr|I1LM82|I1LM82_SOYBN | 2.00E-60 | Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00900 | 51391 | 52665 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01580 | E4.1.1.15, gadB, gadA, GAD | EC:4.1.1.15 | Butanoate metabolism | map00650 |
| Alanine, aspartate and glutamate metabolism | map00250 | |||
| beta-Alanine metabolism | map00410 | |||
| Taurine and hypotaurine metabolism | map00430 | |||
| Quorum sensing | map02024 | |||
| GABAergic synapse | map04727 | |||
| Type I diabetes mellitus | map04940 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.486 |
| SRR1783600 | control | 1.494 |
| SRR1783602 | moderate drought stress | 1.936 |
| SRR1811619 | moderate drought stress | 2.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.788 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.582 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.343 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.294 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.904 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.758 |
| SRR2967015 | Control (Tissue:root) | 0.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.186 |
| SRR9715740 | Leave | 2.285 |
| SRR9715741 | Leave | 2.831 |
| SRR9715739 | Root | 1.408 |
| SRR9715742 | Root | 1.066 |
| SRR9715743 | Root | 0.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.090 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.079 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.447 |
| SRR8400027 | Control-Root | 0.382 |