Gene detail

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Gene detail information of Glyur000902s00028781.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26140.1	1.00E-154	FTSH protease 4
NR	KDP34089.1	0	hypothetical protein JCGZ_07660 [Jatropha curcas]
COG	YP_505717.1	2.00E-107	ATP-dependent metalloprotease FtsH [Anaplasma phagocytophilum str. HZ]
Swissprot	tr\|O80983\|FTSH4_ARATH	0	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (Precursor)
trEMBL	tr\|A0A067KQI6\|A0A067KQI6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP34089.1}

Sequence

Transcript Sequence

>Glyur000902s00028781.1
AAGCAGGAGCATAAAGATGTAAATTACCTTTACACTCAAAAAAGGGAAGAACATACTTCACAAGTTGAACTTCTTGGAACTAAATGTGCTCCTGTTCATACGGTTGCTCAAGAACCTTTCAGAATTAAGGAGAAAATATGGTCTACAATTAGGACCATTGCAGTGACCTTTGTCATAGTTTCTGGTTTGGAAGCACTGGTGGAGAGAGATGACGGAGAAAATAGGAGCGTATTCAGTAAATTTCATGTGAAACCCGTCATGGAATCAAATACCAAGTTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCAGAGCTGGAAGAAGTTGTTCAATACCTCAGAGATCCCAAGCGCTTTACCCGTCTTGGTGCTCCCAAAAGGTGTGCTGCTTATAGGAGCACCTGGCAATGGAAAACAATGCTGGCAAGAGCTGTAGCTGGAGAGGCTGGTGTTCCTTTCTTTTGTTGCAGTGGAAGTGAGTTTGATGAAATTTGGGGGAAAAGACGCTCCTCAGATCAACATGCCAACAGGATGACTCTGAACCAGCTGCTTGTTGAAGTAGATGGTTTCAAGCAAAGTGAAGGCATTATTGTGATAGGAGCTACTAATTATCCTAAGACATTAGACAAGGCCTTAACTAGACCCGGACGATTTGACCGCCATGTTGTTGTTCACTATCCAGATATTGAGGGAAGAAGGCAGATCATAGAATCTTATATGTCTAAGGTTGTGAAGGGTGATGATGTTGATATAATGGTCTTGGCACGAGGAACATCTTGGTTCTCCGGTGCCGAGCTTGCNAACATGGTTAACATTGCTGCTGTCAAGGCTGCAATGGATGGTGCCAAAGCCGTGAGCATGACCCACCTAGAGTATGCTAAGGACAAGATTCTGATGGGAAGTGAACGCAAGTCAGCTCTCATATCTGAGGAGACAAGAAGGGGCATTGCTATCTATAAGGCTGGCTATGCNCTTGTGGCCACTCACACTGATGGGGCAGACCCTGTTCACAAGGCAACTATTCTCCCNAGAAGGAACAGTCATGGCGTAGTTACTCAATTGCCTCCCAAGGATANGAGCCNAATCACTCGCAAACAGATGCTTGCAAAGNTTGATACTTACATGGGCGGTCGTGTTGCTGAAGAACTCATCTATGGAGAGAATGGAGTTACCTCTCTTGCANGGAGAGATCTTGAGTGGGCAACTAGCTGGGCAAGGGTAATGGTTACTACATATGGCATGAACAATGAAGTTGGAGTTGCNCANCACAGTTACACTTATGGTGGGAGAAACATGAGCTCAGAGACAAGGCTTCTGATTGAGAAAGAGGTGAAGAAGTTGCTGGATAATGCTTACAACAATGCAAAAACTATTCTAACCTCACAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00902	86775	89649	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08955	YME1	EC:3.4.24.-	Mitophagy - yeast	map04139

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function GO:0004222 metalloendopeptidase activity GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000902s00028781.1	PF00004.24	AAA	160	224	5.30E-13
Glyur000902s00028781.1	PF01434.13	Peptidase_M41	287	462	9.80E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.411
SRR1783600	control	0.261
SRR1783602	moderate drought stress	0.625
SRR1811619	moderate drought stress	0.440

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.080
DRR006522	Root Winter glycyrrhizin high producing strain	0.078
DRR006523	Root Summer glycyrrhizin low producing strain	0.238
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.006

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.117
SRR2868004	Drought Stress(Tissue:root)	0.091
SRR2967015	Control (Tissue:root)	0.221

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.082
SRR9715740	Leave	0.089
SRR9715741	Leave	0.580
SRR9715739	Root	0.000
SRR9715742	Root	0.240
SRR9715743	Root	0.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.050
SRR8749028	MeJA induced 9h	0.041
SRR8749029	MeJA induced 9h	0.065
SRR8749030	Uninduced	0.589
SRR8749031	Uninduced	0.255
SRR8749032	Uninduced	0.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.159
SRR8400027	Control-Root	0.169