Gene detail

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Gene detail information of Glyur000902s00028783.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26140.1	4.00E-156	FTSH protease 4
NR	XP_002516427.1	0	Protein YME1, putative [Ricinus communis]
COG	YP_003545912.1	2.00E-110	cell division protease FtsH [Sphingobium japonicum UT26S]
Swissprot	tr\|O80983\|FTSH4_ARATH	0	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (Precursor)
trEMBL	tr\|B9RRQ8\|B9RRQ8_RICCO	0	Protein YME1, putative {ECO:0000313\|EMBL:EEF45768.1}

Sequence

Transcript Sequence

>Glyur000902s00028783.1
ATGGCTTGGAGGTGTTTGACAAAAGCAGGTTGCAAGGTGTCATTCAGAATTTGGACAGGACATTATCTTAATAATGATCAGATAGAGTGTCTGAACTTATTTGGTGATTCTAATTCAGGGAAGCAGGAGCATAAAGATGTAAATTACCTTTACACTCAAAAAAGGGAAGAACATACTTCACAAGTTGAACTTCTTGGAACTAATTTGGCTCCTATTCATATGGTTTCTCTAGAACCTTCCAGAATTAAAGAGAGAATATGGTCTGCAATTAGGACCATTGCAGTGACCTTTGTCATAGTTTCTGGAATGGATGCAATCTTGGAGAAGTATAAAAGAGAACATGAGAGCGCATTCCATACACCCATCATGGAATCAAATACCAAGTTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCAGAGCTGGAAGAAATTGTTCAATACCTCAGAGATCCCAAGCGCTTTACTCGTCTTGGCGGTAAGCTCCCAAAAGGTGTGTTGCTTATAGGAGCACCTGGTAATGGAAAACAATGCTGGCAAGAGCTATGCTCTTGGGGGAAAAGAAACTCCTCAGACAAGCATGCCATCAGGATGACTGTGAACCAGCTGCTTGTTGAATTAGATGGTTTCAAGCAAAATCAAGGCATTATTGTGGTAGGAGCTACTAATTTTCCTAAGGCATTAGACAAGGCCTTAATTAGACCCGGACGGTTTGACCACCGTGTTGTTGTTCCCTATCCAGATGTTGAAGGAAGAAGGCAGATTATAGAATCTTATATGTCTAAGGTTGTGAAGGGTGATGATGTTGATACAATGGTCTTGGCACGAGGAACATCTTNGTTCTCTGGTGCCGANCTTGCGAACATGATTAACANTGCTGCTGTCAAGGCTGCATTGGATGGTGCCAAAGCNGTGAGCATGACCCACCTAGAGTATGCCANGGACAAGATTNTNATGGGAAGTGAACGCAAGTCAGCTCTCATATCTAAGGAGTCAAGAAGGAGCATTGCTTTCTATAATGCTGGCTATGCCCTTGTNGCNACTCACACTGATGGGGCTGACCCTGTTCACAAGGCAACTATTCTCCCAAGAAGGAACACTCTTGGCATAGTTACTCAATTGCCTCCCAAGGATAGGAGCCTAATCACTCGCAAACAGATGCTTGCAAAGATTGATACTTACATGGGCGGTCGGGTTGCTGAAGAACTCATCTTTGGAGAGAANGGAGTTACCTCTATTGCATGGAGAGATCTTGAGTGGGCAACTAGATGGGCAAGGGTAATGGTTACTATATATGGCATGAATGATGAAGTTGGAACTGCCACTCACAATTACACTGATGGTGGGAGAAANATGAGCTCAGAGACAAGGCTTTTGATTGAGAAAGAGGTGAAGAAGTTGCTGGATAAGGCTTACAACAANGCAAAAGCTATTCTAACCTCACATAGTGATGAACTTCATGCACTAGCGGATGCCCTTATGGAGCATGAGACTCTTACAGGAAGTGAGATAAAGGCTTTGATTGCAAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00902	101107	105798	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08955	YME1	EC:3.4.24.-	Mitophagy - yeast	map04139

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function GO:0004222 metalloendopeptidase activity GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000902s00028783.1	PF00004.24	AAA	187	245	2.60E-10
Glyur000902s00028783.1	PF01434.13	Peptidase_M41	307	507	6.80E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.036
SRR1783600	control	0.036
SRR1783602	moderate drought stress	0.084
SRR1811619	moderate drought stress	0.063

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.353
DRR006520	Root Summer glycyrrhizin high producing strain	0.351
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.643
DRR006524	Root Summer glycyrrhizin low producing strain	0.408
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.416
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.264

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.294
SRR2868004	Drought Stress(Tissue:root)	0.122
SRR2967015	Control (Tissue:root)	0.048

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.127
SRR9715740	Leave	0.000
SRR9715741	Leave	0.077
SRR9715739	Root	0.000
SRR9715742	Root	0.020
SRR9715743	Root	0.075

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.251
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.089
SRR8749030	Uninduced	0.083
SRR8749031	Uninduced	0.075
SRR8749032	Uninduced	0.047

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.209
SRR8400027	Control-Root	0.499