Gene detail information of Glyur000905s00030408.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65670.1 | 2.00E-103 | indole-3-acetic acid inducible 9 |
| NR | XP_004509715.1 | 0 | PREDICTED: auxin-responsive protein IAA9-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q38827|IAA9_ARATH | 8.00E-138 | Auxin-responsive protein IAA9 |
| trEMBL | tr|V7CE66|V7CE66_PHAVU | 0 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00905 | 58148 | 62528 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000905s00030408.1 | PF02309.11 | AUX_IAA | 68 | 344 | 3.00E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 64.829 |
| SRR1783600 | control | 66.028 |
| SRR1783602 | moderate drought stress | 69.353 |
| SRR1811619 | moderate drought stress | 69.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 123.229 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 119.669 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.825 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.665 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 122.261 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 122.412 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.791 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 74.743 |
| SRR2868004 | Drought Stress(Tissue:root) | 80.478 |
| SRR2967015 | Control (Tissue:root) | 60.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.171 |
| SRR9715740 | Leave | 8.974 |
| SRR9715741 | Leave | 10.400 |
| SRR9715739 | Root | 24.744 |
| SRR9715742 | Root | 67.014 |
| SRR9715743 | Root | 61.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.623 |
| SRR8749028 | MeJA induced 9h | 53.078 |
| SRR8749029 | MeJA induced 9h | 39.126 |
| SRR8749030 | Uninduced | 8.083 |
| SRR8749031 | Uninduced | 2.009 |
| SRR8749032 | Uninduced | 7.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 58.051 |
| SRR8400027 | Control-Root | 68.156 |