Gene detail information of Glyur000905s00030409.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37890.1 | 9.00E-29 | Zinc finger (C3HC4-type RING finger) family protein |
| NR | XP_003516882.1 | 2.47E-128 | PREDICTED: uncharacterized protein LOC100794006 [Glycine max] |
| trEMBL | tr|I1J6W3|I1J6W3_SOYBN | 9.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G23870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00905 | 83823 | 86133 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000905s00030409.1 | PF13639.1 | zf-RING_2 | 109 | 153 | 3.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 74.258 |
| SRR1783600 | control | 74.176 |
| SRR1783602 | moderate drought stress | 69.677 |
| SRR1811619 | moderate drought stress | 69.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 78.772 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 76.267 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.639 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.435 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.860 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.448 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.249 |
| SRR2967015 | Control (Tissue:root) | 25.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.226 |
| SRR9715740 | Leave | 3.128 |
| SRR9715741 | Leave | 1.438 |
| SRR9715739 | Root | 5.720 |
| SRR9715742 | Root | 36.279 |
| SRR9715743 | Root | 28.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.202 |
| SRR8749028 | MeJA induced 9h | 0.778 |
| SRR8749029 | MeJA induced 9h | 0.401 |
| SRR8749030 | Uninduced | 0.135 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.904 |
| SRR8400027 | Control-Root | 31.755 |