Gene detail information of Glyur000905s00030410.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37880.1 | 3.00E-127 | LisH/CRA/RING-U-box domains-containing protein |
| NR | XP_003516880.1 | 0 | PREDICTED: protein RMD5 homolog A-like [Glycine max] |
| trEMBL | tr|I1J6W1|I1J6W1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G23830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00905 | 90772 | 91932 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000905s00030410.1 | PF10607.4 | CLTH | 151 | 291 | 5.00E-31 |
| Glyur000905s00030410.1 | PF13445.1 | zf-RING_UBOX | 329 | 370 | 1.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.057 |
| SRR1783600 | control | 25.447 |
| SRR1783602 | moderate drought stress | 21.299 |
| SRR1811619 | moderate drought stress | 21.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.592 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.446 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.614 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.806 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.568 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.992 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.657 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.649 |
| SRR2967015 | Control (Tissue:root) | 40.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.634 |
| SRR9715740 | Leave | 34.223 |
| SRR9715741 | Leave | 28.632 |
| SRR9715739 | Root | 16.904 |
| SRR9715742 | Root | 18.963 |
| SRR9715743 | Root | 20.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.010 |
| SRR8749028 | MeJA induced 9h | 85.769 |
| SRR8749029 | MeJA induced 9h | 50.574 |
| SRR8749030 | Uninduced | 32.043 |
| SRR8749031 | Uninduced | 54.464 |
| SRR8749032 | Uninduced | 45.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 34.495 |
| SRR8400027 | Control-Root | 31.187 |