Gene detail

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Gene detail information of Glyur000906s00028240.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19730.1	2.00E-150	Pectin lyase-like superfamily protein
NR	XP_003516527.2	0	PREDICTED: probable pectinesterase 53-like [Glycine max]
COG	YP_003404589.1	4.00E-57	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	0	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|I1J4H5\|I1J4H5_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000906s00028240.1
CTCATCATAAGACGATGAGAGACTTGGTTATAGCTGTTGGATATAGTGAACAACCTATGCAGGTCTCTCACCGTAGACCGTGCCTATAAATAAACCATAGTCCATGGCACCAACTAATTTCTAACATCACTTCAAATTCCNAATATACCATTCCCCTCCCATTATAGTTTTTCACTTCACAATATTCTCTCTTGAGAATTAATGTCCAACAACTTGCATTACATTTTCACCATGTTGGTAGTTCTTCTTCTTCTTCTCATTCTACAAAATCCCAGCAAAATACATTGCCATACAAAGGGAATTCGACCAAGACATTCTTCTTCAGGGAAGGGTTTATCCACAAACTACACATCTAGAGCAGAGTTTTCAGAACAACAATTCATGAAATGGGTGGATTTTGTTGGTACCCTCAAACACTCAGTTTTCAAGGCTGCAAGAAACAAGCTCTTTGCTTCTTACACTTTGCATGTTGATAAGAATAATCCTTCTGCTGGAGACTTCACATCAATTCAAGAAGCCATTGATTCTCTTCCATCTATTAATCTTGTGAGAGTGATCATCAAGGTCCATGCAGGTGTTTACACGGAGAAAGTTAGCATTCCTCCTTTGAAATCCTTCATAACCATAGAAGGAGCTGGTGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCTGGGCCAAGAGGGAATCCTCTTGGAACCTATGGTTCAGCAACTTTTGCAGTGAATTCACCTTATTTCATTGCCAAAAACATCACATTCCAAGCTGTGGCATTTAGGATTTCAGCNGACACAGCAGCATTCCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTATATGATCATGTGGGAAGACATTACTATAAGGATTGTTACATTGAAGGTTCTGTTGATTTCATATTCGGCAATGCTCTCTCCCTCTATGAGGGATGTCACGTGCATGCCATAGCACAGAACACAGGGGCAGTAACAGCACAAGGGAGGAGCAGTGTGATGGAAGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGNTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCTTTNTCTCGCGTGGTCTTTGCCTACACCTATATGGACAACATCATCATTCCCAAAGGCTGGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAGGAAGCTAGACCTTTTCTTTCTCTTACCTATATTGATGGGACTGAATGGATCGAATTTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00906	83536	88529	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000906s00028240.1	PF01095.14	Pectinesterase	97	357	4.00E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.609
SRR1783600	control	5.527
SRR1783602	moderate drought stress	1.365
SRR1811619	moderate drought stress	1.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.121
DRR006520	Root Summer glycyrrhizin high producing strain	3.858
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.036
DRR006524	Root Summer glycyrrhizin low producing strain	2.858
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.295
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.448

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.054
SRR2868004	Drought Stress(Tissue:root)	6.428
SRR2967015	Control (Tissue:root)	3.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.464
SRR9715740	Leave	0.480
SRR9715741	Leave	0.415
SRR9715739	Root	1.556
SRR9715742	Root	1.423
SRR9715743	Root	0.872

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.044
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.146
SRR8400027	Control-Root	13.977