Gene detail information of Glyur000907s00031034.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G09850.12.00E-82Transcription elongation factor (TFIIS) family protein
NRXP_003531399.18.64E-173PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c-like [Glycine max]
Swissprottr|F4KFC7|MD26C_ARATH2.00E-119Probable mediator of RNA polymerase II transcription subunit 26c
trEMBLtr|I1KTE5|I1KTE5_SOYBN3.00E-173Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15430.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0090728006284+


Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000907s00031034.1PF08711.6Med261161671.80E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.346
SRR1783600control17.359
SRR1783602moderate drought stress22.175
SRR1811619moderate drought stress21.635

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.833
DRR006520Root Summer glycyrrhizin high producing strain24.634
DRR006521Root Winter glycyrrhizin high producing strain19.012
DRR006522Root Winter glycyrrhizin high producing strain18.468
DRR006523Root Summer glycyrrhizin low producing strain35.251
DRR006524Root Summer glycyrrhizin low producing strain36.411
DRR006525Leaf Summer glycyrrhizin high producing strain16.411
DRR006526Leaf Summer glycyrrhizin high producing strain16.196

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.930
SRR2868004Drought Stress(Tissue:root)30.515
SRR2967015Control (Tissue:root)36.497

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.148
SRR9715740Leave28.201
SRR9715741Leave37.315
SRR9715739Root4.370
SRR9715742Root18.545
SRR9715743Root14.429

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h126.331
SRR8749028MeJA induced 9h135.164
SRR8749029MeJA induced 9h184.751
SRR8749030Uninduced75.127
SRR8749031Uninduced112.941
SRR8749032Uninduced107.210

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.929
SRR8400027Control-Root24.298

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved