Gene detail information of Glyur000907s00031037.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32170.19.00E-23xyloglucan endotransglucosylase/hydrolase 30
NRXP_004512469.17.74E-51PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 30-like [Cicer arietinum]
Swissprottr|Q38908|XTH30_ARATH1.00E-28Probable xyloglucan endotransglucosylase/hydrolase protein 30 (Precursor)
trEMBLtr|I3SK34|I3SK34_LOTJA1.00E-50Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009072769828293-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000907s00031037.1PF00722.16Glyco_hydro_16481121.10E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.417
SRR1783600control9.302
SRR1783602moderate drought stress10.283
SRR1811619moderate drought stress10.137

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.878
DRR006520Root Summer glycyrrhizin high producing strain7.387
DRR006521Root Winter glycyrrhizin high producing strain10.890
DRR006522Root Winter glycyrrhizin high producing strain11.686
DRR006523Root Summer glycyrrhizin low producing strain55.077
DRR006524Root Summer glycyrrhizin low producing strain61.478
DRR006525Leaf Summer glycyrrhizin high producing strain4.593
DRR006526Leaf Summer glycyrrhizin high producing strain2.182

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.798
SRR2868004Drought Stress(Tissue:root)18.205
SRR2967015Control (Tissue:root)18.672

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.854
SRR9715740Leave21.772
SRR9715741Leave28.786
SRR9715739Root5.360
SRR9715742Root6.965
SRR9715743Root4.170

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.329
SRR8749028MeJA induced 9h17.501
SRR8749029MeJA induced 9h8.528
SRR8749030Uninduced8.664
SRR8749031Uninduced6.386
SRR8749032Uninduced28.350

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.927
SRR8400027Control-Root13.637

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved