Gene detail information of Glyur000908s00027280.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35740.10DEAD/DEAH box RNA helicase family protein
NRXP_003595317.10ATP-dependent DNA helicase Q1 [Medicago truncatula]
COGYP_004615954.11.00E-77ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
Swissprottr|Q9FT72|RQL3_ARATH0ATP-dependent DNA helicase Q-like 3
trEMBLtr|G7IGG6|G7IGG6_MEDTR0RecQ family ATP-dependent DNA helicase {ECO:0000313|EMBL:AES65568.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009085934584270-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10901BLM, RECQL3, SGS1 EC:3.6.4.12 Homologous recombination map03440
Fanconi anemia pathwaymap03460


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000908s00027280.2PF00270.24DEAD1172415.40E-10
Glyur000908s00027280.2PF00271.26Helicase_C3133540.00042


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.979
SRR1783600control10.699
SRR1783602moderate drought stress8.936
SRR1811619moderate drought stress8.918

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.614
DRR006520Root Summer glycyrrhizin high producing strain5.519
DRR006521Root Winter glycyrrhizin high producing strain8.970
DRR006522Root Winter glycyrrhizin high producing strain8.679
DRR006523Root Summer glycyrrhizin low producing strain4.934
DRR006524Root Summer glycyrrhizin low producing strain5.104
DRR006525Leaf Summer glycyrrhizin high producing strain6.307
DRR006526Leaf Summer glycyrrhizin high producing strain6.526

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.255
SRR2868004Drought Stress(Tissue:root)11.856
SRR2967015Control (Tissue:root)12.562

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.322
SRR9715740Leave6.742
SRR9715741Leave4.567
SRR9715739Root0.278
SRR9715742Root2.308
SRR9715743Root1.761

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h54.698
SRR8749028MeJA induced 9h39.537
SRR8749029MeJA induced 9h53.033
SRR8749030Uninduced41.866
SRR8749031Uninduced55.935
SRR8749032Uninduced39.814

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.966
SRR8400027Control-Root18.485

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved