Gene detail information of Glyur000910s00020578.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51680.1 | 4.00E-169 | 4-coumarate:CoA ligase 1 |
| NR | XP_003604127.1 | 0 | 4-coumarate CoA ligase [Medicago truncatula] |
| COG | YP_003395797.1 | 2.00E-77 | AMP-dependent synthetase and ligase [Conexibacter woesei DSM 14684] |
| Swissprot | tr|O24146|4CL2_TOBAC | 0 | 4-coumarate--CoA ligase 2 |
| trEMBL | tr|G7JVI7|G7JVI7_MEDTR | 0 | 4-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:AES86324.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00910 | 91649 | 96759 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000910s00020578.1 | PF00501.23 | AMP-binding | 49 | 367 | 5.60E-56 |
| Glyur000910s00020578.1 | PF13193.1 | AMP-binding_C | 395 | 467 | 3.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.525 |
| SRR1783600 | control | 20.636 |
| SRR1783602 | moderate drought stress | 24.335 |
| SRR1811619 | moderate drought stress | 24.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.625 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.037 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.764 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.570 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.544 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.754 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.653 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 158.947 |
| SRR2868004 | Drought Stress(Tissue:root) | 189.129 |
| SRR2967015 | Control (Tissue:root) | 206.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 273.188 |
| SRR9715740 | Leave | 253.824 |
| SRR9715741 | Leave | 427.217 |
| SRR9715739 | Root | 49.781 |
| SRR9715742 | Root | 92.596 |
| SRR9715743 | Root | 85.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 77.992 |
| SRR8749028 | MeJA induced 9h | 252.872 |
| SRR8749029 | MeJA induced 9h | 47.660 |
| SRR8749030 | Uninduced | 189.983 |
| SRR8749031 | Uninduced | 90.623 |
| SRR8749032 | Uninduced | 110.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 124.936 |
| SRR8400027 | Control-Root | 50.274 |