Gene detail information of Glyur000913s00026124.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65750.102-oxoglutarate dehydrogenase, E1 component
NRAES78037.20E1 subunit-like 2-oxoglutarate dehydrogenase [Medicago truncatula]
COGYP_001415072.102-oxoglutarate dehydrogenase E1 component [Xanthobacter autotrophicus Py2]
trEMBLtr|G7KVS0|G7KVS0_MEDTR0E1 subunit-like 2-oxoglutarate dehydrogenase {ECO:0000313|EMBL:AES78037.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009131067517084+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00164OGDH, sucA EC:1.2.4.2 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Lysine degradationmap00310
Tryptophan metabolismmap00380


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004591  oxoglutarate dehydrogenase (succinyl-transferring) activity

GO:0016624  oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

GO:0030976  thiamine pyrophosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000913s00026124.1PF00676.15E1_dh2495661.10E-61
Glyur000913s00026124.1PF02779.19Transket_pyr6378514.60E-64


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.573
SRR1783600control56.708
SRR1783602moderate drought stress60.533
SRR1811619moderate drought stress60.369

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain69.544
DRR006520Root Summer glycyrrhizin high producing strain68.797
DRR006521Root Winter glycyrrhizin high producing strain51.701
DRR006522Root Winter glycyrrhizin high producing strain50.375
DRR006523Root Summer glycyrrhizin low producing strain75.510
DRR006524Root Summer glycyrrhizin low producing strain75.892
DRR006525Leaf Summer glycyrrhizin high producing strain55.852
DRR006526Leaf Summer glycyrrhizin high producing strain55.753

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)140.025
SRR2868004Drought Stress(Tissue:root)134.011
SRR2967015Control (Tissue:root)134.793

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.354
SRR9715740Leave71.461
SRR9715741Leave100.940
SRR9715739Root63.027
SRR9715742Root112.807
SRR9715743Root103.971

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h145.710
SRR8749028MeJA induced 9h58.054
SRR8749029MeJA induced 9h79.002
SRR8749030Uninduced16.604
SRR8749031Uninduced46.422
SRR8749032Uninduced28.572

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root99.503
SRR8400027Control-Root98.874

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved