Gene detail information of Glyur000913s00026129.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55320.10P-glycoprotein 20
NRXP_004492090.10PREDICTED: ABC transporter B family member 20-like [Cicer arietinum]
COGYP_005367043.15.00E-93efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9M3B9|AB20B_ARATH0ABC transporter B family member 20
trEMBLtr|I1JDS0|I1JDS0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G10530.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009134506854872-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000913s00026129.1PF00664.18ABC_membrane873561.40E-32
Glyur000913s00026129.1PF00005.22ABC_tran4285721.30E-24
Glyur000913s00026129.1PF00664.18ABC_membrane83710971.80E-33
Glyur000913s00026129.1PF00005.22ABC_tran116313112.40E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.171
SRR1783600control7.298
SRR1783602moderate drought stress9.455
SRR1811619moderate drought stress9.432

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.839
DRR006520Root Summer glycyrrhizin high producing strain8.976
DRR006521Root Winter glycyrrhizin high producing strain10.560
DRR006522Root Winter glycyrrhizin high producing strain10.139
DRR006523Root Summer glycyrrhizin low producing strain10.475
DRR006524Root Summer glycyrrhizin low producing strain10.462
DRR006525Leaf Summer glycyrrhizin high producing strain5.151
DRR006526Leaf Summer glycyrrhizin high producing strain5.107

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.721
SRR2868004Drought Stress(Tissue:root)20.323
SRR2967015Control (Tissue:root)20.307

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.446
SRR9715740Leave9.737
SRR9715741Leave13.752
SRR9715739Root3.165
SRR9715742Root14.395
SRR9715743Root12.888

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.612
SRR8749028MeJA induced 9h10.975
SRR8749029MeJA induced 9h36.659
SRR8749030Uninduced14.714
SRR8749031Uninduced70.424
SRR8749032Uninduced60.594

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.776
SRR8400027Control-Root13.455

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved