Gene detail information of Glyur000913s00026132.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G56150.28.00E-65ubiquitin-conjugating enzyme 30
NRXP_002274335.11.35E-83PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Vitis vinifera]
COGYP_008797956.15.00E-23ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35135|UBC4_SOLLC3.00E-83Ubiquitin-conjugating enzyme E2-17 kDa
trEMBLtr|A5AI12|A5AI12_VITVI5.00E-84Putative uncharacterized protein {ECO:0000313|EMBL:CAN77946.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold009136603769983+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06689UBE2D, UBC4, UBC5 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000913s00026132.1PF00179.21UQ_con51432.50E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.209
SRR1783600control14.323
SRR1783602moderate drought stress17.598
SRR1811619moderate drought stress17.515

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.256
DRR006520Root Summer glycyrrhizin high producing strain15.180
DRR006521Root Winter glycyrrhizin high producing strain27.223
DRR006522Root Winter glycyrrhizin high producing strain25.831
DRR006523Root Summer glycyrrhizin low producing strain7.669
DRR006524Root Summer glycyrrhizin low producing strain8.246
DRR006525Leaf Summer glycyrrhizin high producing strain8.289
DRR006526Leaf Summer glycyrrhizin high producing strain8.546

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.507
SRR2868004Drought Stress(Tissue:root)12.337
SRR2967015Control (Tissue:root)11.533

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.235
SRR9715740Leave7.887
SRR9715741Leave3.906
SRR9715739Root1.816
SRR9715742Root1.541
SRR9715743Root2.477

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h60.650
SRR8749028MeJA induced 9h10.952
SRR8749029MeJA induced 9h42.123
SRR8749030Uninduced7.742
SRR8749031Uninduced20.777
SRR8749032Uninduced23.134

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.100
SRR8400027Control-Root10.941

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved