Gene detail information of Glyur000914s00025713.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44530.2 | 0 | homolog of histone chaperone HIRA |
| NR | XP_003540239.1 | 0 | PREDICTED: protein HIRA-like isoform X1 [Glycine max] |
| COG | NP_487506.1 | 9.00E-24 | hypothetical protein alr3466 [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q652L2|HIRA_ORYSJ | 0 | Protein HIRA |
| trEMBL | tr|K7LVP9|K7LVP9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00914 | 17153 | 23636 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000914s00025713.1 | PF00400.27 | WD40 | 27 | 52 | 0.0018 |
| Glyur000914s00025713.1 | PF00400.27 | WD40 | 69 | 102 | 3.40E-07 |
| Glyur000914s00025713.1 | PF00400.27 | WD40 | 126 | 164 | 5.10E-10 |
| Glyur000914s00025713.1 | PF00400.27 | WD40 | 169 | 205 | 2.10E-08 |
| Glyur000914s00025713.1 | PF00400.27 | WD40 | 265 | 332 | 0.032 |
| Glyur000914s00025713.1 | PF00400.27 | WD40 | 348 | 372 | 0.1 |
| Glyur000914s00025713.1 | PF07569.6 | Hira | 699 | 885 | 4.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.353 |
| SRR1783600 | control | 7.355 |
| SRR1783602 | moderate drought stress | 8.258 |
| SRR1811619 | moderate drought stress | 8.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.511 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.171 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.648 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.471 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.485 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.990 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.768 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.012 |
| SRR2967015 | Control (Tissue:root) | 16.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.894 |
| SRR9715740 | Leave | 22.098 |
| SRR9715741 | Leave | 19.498 |
| SRR9715739 | Root | 4.833 |
| SRR9715742 | Root | 12.594 |
| SRR9715743 | Root | 11.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.583 |
| SRR8749028 | MeJA induced 9h | 9.111 |
| SRR8749029 | MeJA induced 9h | 3.038 |
| SRR8749030 | Uninduced | 10.813 |
| SRR8749031 | Uninduced | 4.281 |
| SRR8749032 | Uninduced | 3.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.870 |
| SRR8400027 | Control-Root | 16.381 |